Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 3.8e-67 258.1 133 100.0
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 3.4e-52 208.4 134 79.1
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 2.9e-51 205.3 134 80.6
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 7.2e-50 200.7 134 78.4
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 9.4e-50 200.3 134 79.1
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.2e-49 199.9 134 77.6
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.6e-49 199.5 134 80.6
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 2.7e-49 198.7 134 79.9
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 3.6e-49 198.4 134 79.9
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 4.7e-49 198.0 134 79.1
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.7e-49 198.0 134 76.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 6.1e-49 197.6 134 80.6
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 6.1e-49 197.6 134 79.1
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 6.1e-49 197.6 134 76.1
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 7.9e-49 197.2 134 81.3
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 75.4
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.4e-48 196.4 134 76.1
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 1.4e-48 196.4 134 79.9
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 2.3e-48 195.7 134 74.6
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 6.7e-48 194.1 134 79.1
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 6.7e-48 194.1 133 75.2
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 8.8e-48 193.7 134 75.4
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 8.8e-48 193.7 134 76.1
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 2.6e-47 192.2 134 77.6
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 5.7e-47 191.0 134 73.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.7e-47 191.0 134 78.4
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 7.4e-47 190.7 135 75.6
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 7.4e-47 190.7 134 76.9
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 7.4e-47 190.7 134 73.9
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 9.7e-47 190.3 134 76.9
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 9.7e-47 190.3 134 75.4
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 76.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 76.9
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 76.1
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 3.7e-46 188.3 134 73.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.7e-46 188.3 134 73.9
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 8.2e-46 187.2 134 76.1
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 1.1e-45 186.8 135 74.1
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.4e-45 186.4 134 75.4
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.8e-45 186.0 134 74.6
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 72.4
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 73.1
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.1e-45 184.9 134 73.9
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 4.1e-45 184.9 134 70.1
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 5.3e-45 184.5 134 76.9
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 7.0e-45 184.1 134 70.9
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 9.1e-45 183.7 134 77.6
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 74.6
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 70.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 74.6
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.5e-44 183.0 134 74.6
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 2.0e-44 182.6 119 76.5
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 73.9
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 72.4
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.5e-44 181.4 134 70.9
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 5.9e-44 181.0 134 70.9
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 7.7e-44 180.6 134 73.1
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 7.7e-44 180.6 134 73.1
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.0e-43 180.3 125 76.8
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 1.0e-43 180.3 129 73.6
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 1.3e-43 179.9 134 76.9
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 1.3e-43 179.9 129 72.1
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.7e-43 179.5 134 70.9
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.7e-43 179.5 133 69.2
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.7e-43 179.5 134 73.1
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.2e-43 179.1 134 72.4
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.9e-43 178.7 134 70.1
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.9e-43 178.7 134 70.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.9e-43 178.7 134 70.9
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 3.8e-43 178.3 134 69.4
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 6.5e-43 177.6 128 72.7
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.4e-42 176.4 134 70.1
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.9e-42 176.0 128 73.4
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.5e-42 175.6 123 72.4
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.2e-42 174.9 108 83.3
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 1.2e-41 173.3 111 81.1
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 2.1e-41 172.6 136 68.4
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-41 172.6 138 70.3
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-41 172.6 138 70.3
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 2.7e-41 172.2 138 70.3
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.7e-41 172.2 138 70.3
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.7e-41 172.2 138 70.3
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.7e-41 172.2 138 70.3
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 6.1e-41 171.0 120 73.3
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.1e-41 171.0 138 69.6
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.0e-40 170.2 138 69.6
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.0e-40 170.2 134 69.4
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 2.3e-40 169.1 115 74.8
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 3.9e-40 168.3 136 68.4
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 8.8e-40 167.2 134 66.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.1e-39 166.8 120 72.5
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.5e-39 166.4 136 67.6
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 136 69.9
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 3.3e-39 165.2 115 74.8
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 3.3e-39 165.2 115 74.8
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 3.3e-39 165.2 115 74.8
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 3.3e-39 165.2 115 74.8
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 3.3e-39 165.2 138 70.3
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.3e-39 165.2 138 70.3
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.3e-39 165.2 136 69.9
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.3e-39 165.2 134 70.1
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 9.7e-39 163.7 132 66.7
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 9.7e-39 163.7 135 65.9
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.2e-38 162.5 110 76.4
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 2.8e-38 162.2 134 64.9
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.8e-38 162.2 134 65.7
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 6.3e-38 161.0 107 77.6
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 8.2e-38 160.6 132 67.4
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.8e-37 159.5 120 69.2
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 7.0e-37 157.5 134 62.7
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 9.1e-37 157.1 121 70.2
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.2e-36 156.8 125 64.8
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 4.5e-36 154.8 134 65.7
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 1.7e-35 152.9 134 63.4
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.2e-35 152.5 92 80.4
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.5e-34 149.8 100 75.0
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 1.5e-34 149.8 92 80.4
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 4.2e-34 148.3 134 61.2
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 5.5e-34 147.9 92 79.3
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 8.0e-33 144.1 117 65.0
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.2e-31 140.2 107 69.2
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 2.0e-31 139.4 107 63.6
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.4e-29 133.3 120 65.0
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.5e-28 128.3 124 59.7
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.7e-27 126.3 121 55.4
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 2.2e-27 125.9 93 68.8
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.2e-26 122.1 93 69.9
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.4e-21 104.8 57 86.0
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 1.0e-19 100.5 119 45.4
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 3.8e-19 98.6 83 59.0
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 5.0e-19 98.2 110 49.1
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 5.5e-18 94.7 106 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 1.6e-17 93.2 88 52.3
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.0e-15 86.3 52 76.9
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 2.0e-12 76.3 69 63.8
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 4.5e-12 75.1 124 38.7
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.3e-11 72.8 62 61.3
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.5e-10 70.1 99 42.4
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 4.3e-10 68.6 82 57.3
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 9.8e-07 57.4 68 54.4
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 1.3e-06 57.0 54 66.7
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 2.9e-06 55.8 73 38.4


User provided reference genes

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