Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.5e-173 612.8 320 100.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.3e-126 456.1 320 74.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.3e-102 377.1 323 63.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.2e-95 354.0 323 60.4
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 7.4e-93 344.7 321 62.0
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 2.0e-90 336.7 367 55.6
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 3.9e-86 322.4 327 56.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 1.0e-81 307.8 340 55.9
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 8.5e-81 304.7 365 50.7
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 7.2e-80 301.6 328 54.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.6e-79 300.4 321 53.0
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.1e-79 300.1 325 53.2
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.0e-78 297.7 321 55.1
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 3.9e-78 295.8 322 51.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 6.7e-78 295.0 326 52.5
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 4.4e-77 292.4 321 53.9
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 3.7e-76 289.3 334 54.2
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.1e-75 287.7 331 50.8
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 5.3e-75 285.4 331 50.2
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 9.1e-75 284.6 333 49.5
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.2e-74 284.3 330 50.3
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 3.5e-74 282.7 325 51.1
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.0e-73 281.2 349 49.6
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.0e-73 281.2 324 50.9
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.0e-73 281.2 325 51.1
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 2.2e-73 280.0 320 50.9
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.9e-73 279.6 328 49.4
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 3.8e-73 279.3 320 50.6
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.5e-72 277.3 320 50.6
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.5e-72 276.6 217 65.0
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 4.2e-72 275.8 328 50.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 7.2e-72 275.0 328 52.1
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 7.2e-72 275.0 333 47.1
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 8.0e-71 271.6 332 49.1
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.0e-70 271.2 327 49.5
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 1.8e-70 270.4 325 49.8
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 3.0e-70 269.6 333 49.2
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 6.7e-70 268.5 334 48.5
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.2e-69 267.7 332 48.5
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.2e-69 267.7 319 48.3
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.6e-69 266.5 284 53.5
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 7.5e-69 265.0 324 47.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 7.5e-69 265.0 334 48.5
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 9.7e-69 264.6 363 46.3
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 1.3e-68 264.2 322 51.9
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.8e-68 263.1 218 62.8
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 2.8e-68 263.1 327 48.0
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 2.8e-68 263.1 324 49.4
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.8e-67 260.4 322 51.2
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.1e-67 259.6 326 47.9
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.3e-67 258.8 322 47.5
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 7.0e-67 258.5 325 49.8
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.2e-66 257.7 316 49.1
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.7e-65 253.8 322 45.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.7e-65 253.8 324 46.6
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.2e-65 253.4 327 47.1
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.9e-65 253.1 327 47.1
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 2.9e-65 253.1 326 46.0
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.5e-65 251.9 321 46.7
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 8.5e-65 251.5 327 45.0
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.1e-64 251.1 325 48.3
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 4.2e-64 249.2 321 45.2
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 5.5e-64 248.8 324 45.4
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 9.4e-64 248.1 326 48.5
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.2e-63 247.7 211 62.1
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 1.2e-63 247.7 324 46.9
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.6e-63 247.3 320 45.6
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.7e-63 245.7 329 45.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.1e-63 245.4 325 46.8
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 8.8e-62 241.5 324 47.5
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 1.2e-61 241.1 330 44.2
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 1.2e-61 241.1 330 44.2
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 1.2e-61 241.1 330 44.2
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.5e-61 240.7 323 46.1
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 2.0e-61 240.4 323 46.1
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.6e-61 240.0 226 54.4
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.4e-61 239.6 322 44.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 7.5e-61 238.4 325 45.8
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.7e-60 237.3 322 43.8
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.2e-60 236.9 336 46.4
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 2.8e-60 236.5 328 46.0
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 4.8e-60 235.7 323 47.4
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 6.3e-60 235.3 323 45.5
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 6.3e-60 235.3 323 45.5
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 8.3e-60 235.0 325 44.9
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.4e-59 234.2 324 44.8
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 1.8e-59 233.8 327 45.3
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 3.1e-59 233.0 321 45.8
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.6e-58 230.7 324 44.8
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.7e-58 229.9 328 43.0
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.0e-57 228.0 228 53.5
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.8e-57 226.1 324 43.5
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-56 224.6 326 44.8
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 1.1e-56 224.6 326 44.8
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.9e-56 223.8 322 43.8
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 2.5e-56 223.4 328 43.3
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 5.5e-56 222.2 326 42.6
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.7e-55 219.2 321 42.4
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 1.0e-54 218.0 322 41.3
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.0e-54 218.0 323 44.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.4e-54 217.6 260 49.6
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.8e-54 217.2 326 41.4
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 5.2e-54 215.7 321 42.7
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 6.8e-54 215.3 326 41.7
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 8.8e-54 214.9 321 42.7
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.2e-53 214.5 321 42.1
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 7.5e-53 211.8 334 41.3
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.3e-52 211.1 215 54.4
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 8.3e-52 208.4 321 43.3
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.8e-51 207.2 328 42.1
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.8e-51 207.2 321 41.7
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 3.1e-51 206.5 323 42.1
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.2e-50 204.5 324 42.3
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.2e-50 204.5 318 43.4
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 5.9e-50 202.2 316 42.4
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 7.8e-50 201.8 283 45.6
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 6.6e-49 198.7 245 43.7
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 6.6e-49 198.7 322 40.7
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 3.3e-48 196.4 321 42.4
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.3e-48 196.4 322 42.2
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 9.5e-48 194.9 323 40.9
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 8.0e-47 191.8 313 40.9
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 1.0e-46 191.4 295 44.7
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.0e-46 191.4 321 40.8
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.6e-40 169.1 324 37.0
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 7.5e-37 158.7 357 36.7
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 2.7e-34 150.2 189 49.2
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 4.6e-34 149.4 259 36.7
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.5e-32 144.4 291 38.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 5.6e-32 142.5 321 34.9
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 5.6e-32 142.5 321 34.9
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.6e-31 139.8 180 48.9
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.6e-31 139.8 303 34.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.8e-30 137.5 322 35.1
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 2.9e-28 130.2 384 31.5
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 7.1e-27 125.6 166 45.2
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 9.2e-27 125.2 207 41.1
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.5e-24 117.9 94 63.8
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.3e-24 115.5 370 32.2
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 2.6e-21 107.1 128 48.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-19 101.7 370 30.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-19 100.5 374 29.9
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.5e-18 96.7 365 28.2
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 7.8e-18 95.5 166 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.9e-17 93.2 340 27.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-16 90.1 397 25.9
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.1e-15 85.5 393 23.7
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.9e-11 74.3 284 29.9
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 3.2e-11 73.6 114 37.7
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 2.3e-09 67.4 86 45.3
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.0e-09 67.0 106 44.3
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.5e-08 64.7 187 30.5
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.5e-08 63.9 56 60.7
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 7.3e-08 62.4 61 59.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.8e-07 60.5 259 27.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.8e-07 59.7 170 28.8
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 4.8e-07 59.7 162 35.2
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 6.2e-07 59.3 213 30.0
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.4e-06 58.2 178 32.6
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.4e-06 58.2 160 31.9
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 2.4e-06 57.4 169 31.4
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-06 57.4 327 26.9
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.4e-06 57.4 260 25.8
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 3.1e-06 57.0 203 30.5
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 3.1e-06 57.0 156 30.8
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.0e-06 56.6 271 23.2
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 6.9e-06 55.8 172 31.4
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 6.9e-06 55.8 153 32.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 9.0e-06 55.5 155 31.0


User provided reference genes

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