Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 5.1e-99 364.8 238 100.0
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 3.8e-70 268.9 237 79.3
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.9e-61 240.0 175 81.1
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 4.7e-60 235.3 188 70.7
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 6.1e-60 235.0 188 71.8
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 7.5e-58 228.0 184 69.0
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.2e-57 226.5 188 70.7
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.7e-57 225.7 182 70.9
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 8.3e-57 224.6 186 69.4
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.1e-56 224.2 180 81.1
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.4e-56 223.8 184 67.9
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 4.1e-56 222.2 184 75.0
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 4.1e-56 222.2 184 75.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 9.2e-56 221.1 189 69.8
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.6e-55 220.3 235 57.9
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 3.5e-55 219.2 188 66.0
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 4.6e-55 218.8 237 65.8
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.0e-54 217.6 188 68.1
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.3e-54 217.2 184 67.9
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.3e-54 217.2 188 75.5
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 5.0e-54 215.3 183 64.5
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 6.6e-54 214.9 181 64.6
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 7.3e-53 211.5 185 68.1
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.6e-52 209.1 187 66.3
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 4.7e-52 208.8 242 55.4
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 6.2e-52 208.4 237 64.1
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 8.0e-52 208.0 241 54.4
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 8.0e-52 208.0 237 65.0
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.1e-51 207.6 188 66.5
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.1e-51 207.6 214 68.2
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.4e-51 207.2 188 63.8
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.8e-51 206.8 179 66.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.0e-51 205.7 236 63.6
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 8.9e-51 204.5 237 64.1
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.2e-50 204.1 183 74.9
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.6e-50 203.0 175 65.1
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.6e-50 203.0 241 61.0
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 2.6e-50 203.0 241 61.0
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 4.4e-50 202.2 179 72.1
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 4.4e-50 202.2 175 65.1
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 2.2e-49 199.9 223 57.0
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 4.9e-49 198.7 187 62.0
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 6.4e-49 198.4 180 73.3
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-48 196.4 213 58.2
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 3.2e-48 196.1 237 54.9
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 5.4e-48 195.3 204 62.3
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.2e-48 194.5 213 57.7
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 1.6e-47 193.7 171 65.5
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.1e-47 193.4 228 54.4
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.1e-47 193.4 241 58.5
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.6e-47 192.2 188 57.4
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 7.8e-47 191.4 243 59.7
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.3e-46 190.7 184 66.8
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.3e-46 190.7 241 57.7
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 1.3e-46 190.7 245 53.5
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.7e-46 190.3 238 65.1
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 8.6e-46 188.0 117 79.5
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.1e-45 187.6 232 56.5
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.5e-45 187.2 236 57.2
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.9e-45 186.8 235 56.2
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 2.5e-45 186.4 171 63.7
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 5.6e-45 185.3 232 54.7
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 5.6e-45 185.3 232 54.7
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 9.5e-45 184.5 188 59.0
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 1.2e-44 184.1 239 50.6
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 1.2e-44 184.1 200 60.0
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.6e-44 183.7 236 51.3
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 3.6e-44 182.6 183 67.8
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 1.8e-43 180.3 233 51.1
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 3.1e-43 179.5 180 70.6
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.0e-43 179.1 118 76.3
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 4.0e-43 179.1 236 54.7
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.0e-42 176.8 230 59.6
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.0e-42 176.8 194 67.5
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.4e-42 175.6 187 62.0
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 5.8e-42 175.3 198 65.7
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 5.8e-42 175.3 163 73.0
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 9.9e-42 174.5 237 54.4
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.3e-41 174.1 178 66.9
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.3e-41 174.1 194 67.0
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 2.2e-41 173.3 252 50.4
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 2.9e-41 172.9 195 56.4
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 4.9e-41 172.2 243 49.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 4.9e-41 172.2 243 49.0
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 4.9e-41 172.2 184 59.8
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.4e-41 171.8 268 54.5
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 8.3e-41 171.4 119 76.5
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 2.4e-40 169.9 187 54.5
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 4.1e-40 169.1 235 49.4
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.6e-39 167.2 187 64.2
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 2.7e-39 166.4 188 66.0
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 7.8e-39 164.9 118 71.2
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.3e-38 163.3 177 61.6
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.0e-38 162.9 188 51.6
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 5.1e-38 162.2 184 63.0
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 6.6e-38 161.8 119 73.9
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 8.6e-38 161.4 242 53.3
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.1e-37 161.0 183 55.2
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.5e-37 160.6 182 54.9
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.5e-37 159.8 159 59.7
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.1e-36 156.8 116 72.4
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 4.7e-36 155.6 168 57.1
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 6.2e-36 155.2 192 49.0
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.4e-35 154.1 96 78.1
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 3.1e-35 152.9 181 56.9
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 8.9e-35 151.4 114 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 1.3e-33 147.5 197 47.2
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 4.9e-33 145.6 114 69.3
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.9e-32 143.7 115 67.8
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.6e-31 140.6 155 68.4
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 6.0e-31 138.7 178 48.9
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 7.8e-31 138.3 128 68.8
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 7.8e-31 138.3 172 44.8
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.3e-30 136.7 190 50.5
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.1e-29 134.4 96 71.9
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.1e-29 134.4 113 63.7
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.9e-29 133.7 95 72.6
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.5e-29 133.3 162 59.3
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 3.3e-29 132.9 196 46.4
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-28 131.0 119 64.7
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.8e-28 129.8 118 65.3
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.4e-27 127.5 87 69.0
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.4e-27 127.5 87 69.0
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 9.0e-27 124.8 97 69.1
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 8.4e-25 118.2 184 51.1
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.8e-20 102.4 122 50.8
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 4.0e-19 99.4 67 77.6
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.0e-19 98.2 77 66.2
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-18 97.8 239 38.9
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.2e-16 89.7 119 51.3
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 2.1e-15 87.0 66 63.6
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.6e-12 77.4 99 53.5
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 6.2e-12 75.5 112 48.2
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 2.7e-07 60.1 133 40.6
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.7e-07 60.1 62 54.8
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 6.0e-07 58.9 160 39.4
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.0e-06 58.2 32 87.5
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.3e-06 57.0 32 87.5
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.7e-06 55.5 32 84.4


User provided reference genes

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