Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 2.3e-204 715.3 352 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 6.2e-93 345.1 249 65.9
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.2e-88 330.9 252 62.3
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.6e-88 330.5 249 63.1
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.6e-88 330.5 248 61.7
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 2.7e-88 329.7 280 58.9
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 4.6e-88 328.9 249 63.5
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.8e-87 327.0 249 62.2
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.0e-87 326.2 252 61.9
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 6.7e-87 325.1 273 59.3
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 2.5e-86 323.2 253 59.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 9.6e-86 321.2 257 61.1
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-84 317.4 253 60.1
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 3.1e-84 316.2 249 59.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 4.1e-84 315.8 251 58.6
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 5.3e-84 315.5 253 59.3
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.5e-83 313.9 255 57.3
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.4e-83 312.8 252 58.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 3.4e-83 312.8 247 58.7
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.3e-82 310.8 259 56.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.7e-82 310.5 248 59.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.7e-82 310.5 247 58.3
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.9e-82 309.7 263 56.3
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.9e-82 309.7 234 65.0
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 2.9e-82 309.7 260 61.2
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 3.8e-82 309.3 242 61.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 5.0e-82 308.9 263 55.9
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 6.5e-82 308.5 252 57.5
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 8.4e-82 308.1 249 59.0
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.5e-81 306.6 249 58.6
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.5e-81 306.6 249 58.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.5e-81 306.6 257 57.2
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.2e-81 306.2 247 58.7
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 3.2e-81 306.2 248 59.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.6e-80 303.9 255 56.1
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 2.1e-80 303.5 255 56.9
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.5e-80 302.8 247 56.3
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 4.6e-80 302.4 252 57.5
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 4.6e-80 302.4 248 58.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 4.6e-80 302.4 247 57.1
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-79 300.4 279 52.3
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.3e-79 300.1 243 58.4
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 3.0e-79 299.7 255 55.7
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.9e-79 299.3 271 54.2
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.9e-79 299.3 251 60.2
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 5.1e-79 298.9 242 59.9
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 6.7e-79 298.5 273 55.3
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 8.7e-79 298.1 258 57.4
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 2.5e-78 296.6 258 57.4
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.6e-77 293.9 264 52.3
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 2.2e-77 293.5 235 58.3
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 4.8e-77 292.4 259 57.5
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.1e-76 291.2 259 55.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.1e-76 289.7 249 57.4
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 9.0e-76 288.1 276 54.7
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.2e-75 287.7 246 56.9
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.0e-75 287.0 269 54.6
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.0e-75 287.0 242 58.7
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.0e-75 287.0 246 55.3
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.7e-75 285.0 286 50.0
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-74 284.6 260 54.2
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.2e-74 283.5 264 51.5
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.9e-74 283.1 254 54.7
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.9e-73 280.4 252 51.6
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 3.2e-73 279.6 230 57.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 9.4e-73 278.1 256 53.9
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 9.4e-73 278.1 239 55.2
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.6e-72 277.3 243 58.0
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.9e-71 272.7 235 58.3
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 5.1e-71 272.3 193 66.8
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.1e-70 271.2 235 56.6
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.0e-70 270.4 252 53.6
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 3.3e-70 269.6 252 54.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 4.8e-69 265.8 270 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 9.1e-68 261.5 250 50.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 9.1e-68 261.5 250 52.0
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 3.8e-66 256.1 197 60.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.6e-64 250.8 245 47.8
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 4.7e-64 249.2 198 61.1
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.0e-63 246.5 238 52.5
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 3.9e-63 246.1 235 53.6
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 3.9e-63 246.1 253 50.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 6.7e-63 245.4 257 48.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 9.7e-62 241.5 244 51.6
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.2e-59 234.6 207 53.6
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.0e-59 233.8 379 36.9
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.0e-58 231.5 195 57.9
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 8.5e-58 228.4 233 48.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.4e-57 224.9 207 55.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 9.1e-52 208.4 235 46.0
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 5.9e-51 205.7 154 63.6
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-50 204.9 259 44.4
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-50 204.9 259 44.4
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.9e-49 200.7 153 61.4
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.5e-49 199.1 262 43.1
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.6e-48 196.4 149 59.1
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.0e-47 194.9 166 54.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.8e-47 194.1 171 55.6
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 4.8e-45 186.0 159 55.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 2.0e-43 180.6 136 62.5
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.5e-41 174.5 238 42.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 3.2e-41 173.3 125 60.8
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 8.0e-40 168.7 193 46.1
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.0e-39 166.4 209 40.7
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.5e-38 164.5 135 56.3
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-38 164.5 135 56.3
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.5e-38 164.5 135 56.3
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.6e-38 163.7 135 56.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 5.7e-38 162.5 132 56.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.8e-37 160.2 155 52.3
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 9.2e-36 155.2 125 57.6
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 9.2e-36 155.2 121 61.2
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.2e-35 154.8 118 58.5
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.2e-32 144.8 286 35.0
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 9.2e-28 128.6 139 47.5
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.2e-27 128.3 99 63.6
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 8.6e-26 122.1 295 29.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.5e-25 121.3 104 55.8
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.6e-25 119.4 113 54.9
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 8.0e-24 115.5 93 57.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.1e-23 113.6 101 54.5
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.2e-22 111.7 98 55.1
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.2e-22 111.7 94 57.4
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.5e-22 111.3 99 57.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 8.3e-21 105.5 105 50.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.9e-20 104.4 71 62.0
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 3.2e-20 103.6 97 50.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.5e-17 94.7 55 70.9
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 4.4e-14 83.2 61 62.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.7e-13 81.3 72 47.2
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 5.6e-09 66.2 57 45.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.9e-06 55.5 33 69.7


User provided reference genes

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