Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 9.4e-201 703.7 481 100.0
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.9e-145 520.0 423 72.8
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.7e-133 480.3 420 69.5
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 6.5e-133 478.4 418 72.0
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.8e-130 470.3 428 73.4
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 4.3e-129 465.7 418 69.9
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.7e-129 465.3 420 69.3
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 7.4e-129 464.9 430 67.9
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.6e-128 463.8 418 72.0
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 3.1e-127 459.5 419 70.2
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 5.3e-127 458.8 427 64.2
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.2e-126 457.6 428 65.9
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 2.0e-126 456.8 435 68.0
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 1.0e-125 454.5 420 71.9
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.3e-125 454.1 425 68.9
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 1.3e-125 454.1 425 70.8
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.2e-125 453.4 434 68.2
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.9e-125 453.0 428 65.9
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.9e-125 453.0 418 69.6
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.1e-124 451.1 424 70.8
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.1e-124 451.1 422 73.2
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.4e-124 450.7 420 66.7
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.9e-124 450.3 423 65.0
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.6e-123 447.2 425 66.4
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 3.5e-123 446.0 427 70.0
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 4.6e-123 445.7 426 70.0
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 7.9e-123 444.9 381 73.2
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 1.0e-122 444.5 437 64.5
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 3.0e-122 443.0 424 68.4
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 4.3e-121 439.1 418 69.4
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 4.3e-121 439.1 443 64.3
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.4e-121 438.3 418 69.6
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 7.4e-121 438.3 422 67.1
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 9.7e-121 438.0 421 65.3
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.6e-120 437.2 426 67.1
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.8e-119 433.7 434 65.9
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 4.1e-119 432.6 424 67.9
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 4.1e-119 432.6 427 69.3
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 5.3e-119 432.2 422 67.1
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.2e-118 431.0 422 64.7
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 7.7e-118 428.3 426 66.7
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.7e-117 427.2 430 65.6
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 2.2e-117 426.8 419 68.0
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 5.0e-117 425.6 418 68.9
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 6.5e-117 425.2 418 64.6
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.1e-116 424.5 428 67.5
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.9e-116 423.7 430 65.3
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.9e-116 423.7 429 67.6
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.5e-116 423.3 427 59.3
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 2.5e-116 423.3 430 68.4
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.2e-116 422.9 424 68.2
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 4.2e-116 422.5 423 68.3
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 7.2e-116 421.8 427 62.3
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.8e-114 417.2 431 67.3
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 2.3e-114 416.8 426 66.2
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 3.9e-114 416.0 423 67.8
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 5.1e-114 415.6 430 65.8
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-113 414.1 426 66.0
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 5.7e-113 412.1 425 63.3
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 9.7e-113 411.4 389 68.9
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 9.7e-113 411.4 427 67.4
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 4.8e-112 409.1 426 67.1
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 4.8e-112 409.1 418 65.3
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 4.8e-112 409.1 451 58.5
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 3.1e-111 406.4 422 64.2
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 5.3e-111 405.6 426 66.9
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 5.3e-111 405.6 424 66.5
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 9.1e-111 404.8 609 48.9
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.2e-110 404.4 410 65.9
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.7e-109 400.6 418 65.8
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.7e-109 400.6 427 60.4
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.9e-109 399.8 441 63.3
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.9e-109 399.8 441 63.3
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 6.5e-109 398.7 426 64.8
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 3.2e-108 396.4 419 62.5
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 5.5e-108 395.6 427 67.7
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.0e-106 391.3 421 61.3
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 1.4e-106 391.0 426 65.5
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 6.7e-106 388.7 426 65.5
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 8.8e-106 388.3 434 59.0
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 5.7e-105 385.6 433 57.0
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.7e-104 382.9 404 62.9
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.8e-104 382.5 416 58.7
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.5e-102 377.5 433 61.0
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.6e-99 367.5 425 61.4
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.1e-95 354.8 418 61.7
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-95 353.2 432 55.6
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-95 353.2 432 55.6
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 5.9e-94 349.0 371 65.2
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 4.2e-92 342.8 288 73.3
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.8e-90 337.4 379 59.4
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.8e-90 337.4 380 63.9
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.1e-87 328.2 354 59.0
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 4.1e-87 326.2 429 53.1
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.0e-86 323.9 418 54.3
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.2e-83 314.7 419 50.1
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 3.6e-83 313.2 325 68.6
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 3.6e-83 313.2 294 63.6
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.3e-80 302.4 289 64.4
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 8.3e-80 302.0 281 69.8
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.2e-78 298.1 295 67.5
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.5e-78 296.6 296 61.5
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 3.3e-76 290.0 431 52.9
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 2.0e-73 280.8 288 63.5
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 8.3e-72 275.4 349 51.9
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 7.0e-71 272.3 418 49.0
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 2.8e-67 260.4 564 41.1
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 1.0e-66 258.5 331 59.2
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 2.4e-63 247.3 184 73.4
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-60 238.4 427 50.1
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 3.6e-59 233.4 384 46.6
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.2e-57 228.4 330 56.7
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-53 214.9 367 53.4
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 2.4e-47 194.1 452 41.8
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 4.6e-46 189.9 173 78.0
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 1.0e-37 162.2 102 84.3
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 2.4e-31 141.0 325 45.8
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 5.4e-31 139.8 197 48.2
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 1.2e-30 138.7 105 70.5
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.6e-30 138.3 379 30.3
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 5.6e-28 129.8 87 80.5
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.3e-27 128.6 119 66.4
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 8.1e-27 125.9 175 60.0
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 9.9e-25 119.0 96 89.6
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 1.3e-24 118.6 76 80.3
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.5e-23 113.2 62 83.9
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 6.0e-22 109.8 93 84.9
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.9e-21 107.1 84 76.2
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 6.9e-18 96.3 77 67.5
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.3e-12 77.4 96 53.1
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.3e-11 75.5 63 66.7
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 4.1e-10 70.5 110 44.5
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.9e-08 64.3 87 49.4
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 2.9e-08 64.3 43 72.1
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 1.6e-06 58.5 165 30.3
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 2.1e-06 58.2 102 39.2
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 6.1e-06 56.6 39 74.4


User provided reference genes

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