Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.3e-66 256.1 123 100.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 4.7e-64 247.7 121 96.7
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 5.2e-63 244.2 126 94.4
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 6.8e-63 243.8 126 93.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 6.8e-63 243.8 121 95.9
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 2.0e-62 242.3 123 91.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.4e-62 241.5 126 92.9
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 3.4e-62 241.5 123 93.5
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 6.4e-61 237.3 122 91.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.9e-60 235.7 123 89.4
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 4.1e-60 234.6 123 88.6
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 5.4e-60 234.2 123 88.6
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 1.2e-59 233.0 123 88.6
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.6e-59 232.6 120 89.2
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 90.2
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 90.2
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 7.8e-59 230.3 123 86.2
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 7.8e-59 230.3 123 87.0
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 7.8e-59 230.3 123 87.8
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.0e-58 229.9 123 87.8
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.8
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.8
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.8
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.8
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.0
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.7e-58 229.2 123 87.8
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 3.9e-58 228.0 123 84.6
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.9e-58 228.0 123 87.0
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 5.1e-58 227.6 123 87.8
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 6.6e-58 227.3 123 84.6
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 6.6e-58 227.3 121 87.6
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 8.7e-58 226.9 123 87.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 8.7e-58 226.9 123 86.2
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 8.7e-58 226.9 122 86.9
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.1e-57 226.5 123 86.2
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 1.1e-57 226.5 123 87.0
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.5e-57 226.1 123 85.4
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.5e-57 226.1 123 87.8
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.5e-57 226.1 121 85.1
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.5e-57 226.1 123 85.4
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.5e-57 226.1 122 86.9
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 4.3e-57 224.6 121 85.1
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.3e-57 224.6 121 84.3
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.3e-57 224.6 121 84.3
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 4.3e-57 224.6 123 84.6
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 84.6
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.2e-56 223.0 123 87.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 2.1e-56 222.2 121 84.3
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.6e-56 221.5 123 84.6
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 4.7e-56 221.1 122 86.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.1e-55 219.9 123 84.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.8e-55 219.2 123 82.9
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 2.4e-55 218.8 121 82.6
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 2.4e-55 218.8 123 82.9
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 3.1e-55 218.4 122 84.4
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 4.0e-55 218.0 123 82.9
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 4.0e-55 218.0 123 82.1
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 6.9e-55 217.2 119 85.7
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 82.1
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 6.9e-55 217.2 116 86.2
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 81.3
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.2e-54 216.5 121 81.8
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.5e-54 216.1 123 80.5
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 1.5e-54 216.1 131 80.2
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.0e-54 215.7 123 82.1
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 78.9
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 82.1
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 3.4e-54 214.9 122 81.1
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 5.8e-54 214.2 116 86.2
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 9.9e-54 213.4 123 80.5
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 79.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 79.7
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 77.2
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 4.9e-53 211.1 109 93.6
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.4e-53 210.7 122 80.3
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 8.4e-53 210.3 122 78.7
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.1e-52 209.9 120 81.7
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.4e-52 209.5 121 81.0
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.4e-52 209.5 122 82.8
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.4e-52 209.5 122 82.8
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 76.4
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 7.1e-52 207.2 119 79.8
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.9
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.6e-51 206.1 119 79.0
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 78.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.7e-51 205.3 106 89.6
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 3.5e-51 204.9 106 89.6
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 3.5e-51 204.9 136 72.1
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 4.6e-51 204.5 104 90.4
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 4.6e-51 204.5 113 83.2
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 4.6e-51 204.5 121 79.3
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 6.0e-51 204.1 105 89.5
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 78.0
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 3.0e-50 201.8 121 79.3
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 6.6e-50 200.7 140 69.3
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 6.6e-50 200.7 106 87.7
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.1e-49 199.9 106 89.6
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.1e-49 199.9 106 89.6
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.1e-49 199.9 121 78.5
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.9e-49 199.1 123 76.4
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.9e-49 199.1 121 78.5
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.5e-49 198.7 107 86.9
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 2.5e-49 198.7 118 77.1
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.3e-49 198.4 106 86.8
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 2.1e-48 195.7 104 85.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 6.2e-48 194.1 107 86.0
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 8.1e-48 193.7 106 86.8
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.1e-47 191.8 104 83.7
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 9.0e-47 190.3 105 83.8
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 2.0e-46 189.1 131 71.0
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 3.8e-45 184.9 120 72.5
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 4.9e-45 184.5 106 79.2
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.1e-44 183.3 116 74.1
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 4.2e-44 181.4 99 83.8
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-43 179.9 105 77.1
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 77.4
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.8e-42 176.0 104 79.8
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 2.3e-42 175.6 121 72.7
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.9e-41 172.6 86 91.9
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 4.3e-41 171.4 106 75.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 4.3e-41 171.4 106 75.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 4.3e-41 171.4 106 75.5
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.4e-36 155.6 107 70.1
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 3.7e-32 141.7 95 68.4
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.4e-31 139.8 66 93.9
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 6.9e-31 137.5 111 55.0
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 2.2e-29 132.5 123 56.1
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 4.6e-27 124.8 109 51.4
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.3e-24 116.7 65 81.5
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.7e-24 115.2 68 82.4
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 4.1e-23 111.7 69 78.3
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 5.0e-21 104.8 57 86.0
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 1.8e-15 86.3 65 60.0
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 5.9e-14 81.3 50 66.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 4.2e-12 75.1 44 68.2
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 4.7e-11 71.6 50 68.0


User provided reference genes

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