Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 1.1e-25 119.8 89 100.0
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 2.7e-16 88.6 49 85.7
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 3.5e-16 88.2 48 83.3
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.3e-15 86.3 50 80.0
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.3e-15 85.5 50 76.0
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 8.6e-15 83.6 50 78.0
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 4.2e-14 81.3 50 74.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 5.5e-14 80.9 50 82.0
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.2e-14 80.5 49 75.5
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.2e-13 79.7 50 76.0
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 4.7e-13 77.8 50 68.0
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 4.7e-13 77.8 51 76.5
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 6.1e-13 77.4 47 74.5
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.0e-13 77.0 53 73.6
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-12 75.9 50 72.0
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.8e-12 75.9 50 72.0
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.3e-12 75.5 47 72.3
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-12 75.5 53 69.8
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.3e-12 75.5 53 69.8
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.0e-12 75.1 48 70.8
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 3.0e-12 75.1 45 75.6
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 4.0e-12 74.7 47 74.5
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.0e-12 74.7 47 74.5
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.0e-12 74.7 47 74.5
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 4.0e-12 74.7 49 71.4
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.9e-12 73.6 48 68.8
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-11 73.2 50 70.0
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-11 72.8 50 72.0
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-11 72.8 50 72.0
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 2.6e-11 72.0 44 75.0
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 4.4e-11 71.2 47 68.1
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 5.7e-11 70.9 47 70.2
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 9.8e-11 70.1 49 61.2
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.3e-10 69.7 49 61.2
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 1.3e-10 69.7 50 72.0
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 1.7e-10 69.3 50 70.0
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.7e-10 69.3 50 62.0
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.7e-10 69.3 47 66.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 1.7e-10 69.3 50 64.0
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.7e-10 69.3 47 66.0
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 2.2e-10 68.9 49 65.3
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 2.2e-10 68.9 49 65.3
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.2e-10 68.9 47 66.0
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.8e-10 68.6 44 70.5
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 3.7e-10 68.2 48 66.7
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 6.3e-10 67.4 48 66.7
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 8.3e-10 67.0 47 63.8
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 8.3e-10 67.0 44 68.2
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 1.1e-09 66.6 46 65.2
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 1.1e-09 66.6 47 63.8
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.4e-09 66.2 50 58.0
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 2.4e-09 65.5 47 63.8
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 3.1e-09 65.1 49 61.2
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 3.1e-09 65.1 44 65.9
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 4.1e-09 64.7 44 63.6
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.4e-09 64.3 50 62.0
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.4e-09 64.3 50 62.0
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 7.0e-09 63.9 48 64.6
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.2e-09 63.5 50 62.0
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 9.2e-09 63.5 47 61.7
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 9.2e-09 63.5 41 70.7
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.2e-08 63.2 47 68.1
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 1.6e-08 62.8 51 60.8
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.6e-08 62.8 50 64.0
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.7e-08 62.0 49 55.1
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.7e-08 62.0 50 58.0
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.7e-08 62.0 48 62.5
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 3.5e-08 61.6 48 66.7
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 3.5e-08 61.6 48 64.6
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 3.5e-08 61.6 50 60.0
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 4.5e-08 61.2 51 58.8
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 4.5e-08 61.2 45 62.2
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 4.5e-08 61.2 50 58.0
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 7.8e-08 60.5 48 60.4
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 7.8e-08 60.5 48 62.5
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 1.3e-07 59.7 48 60.4
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 1.3e-07 59.7 49 57.1
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 2.9e-07 58.5 40 65.0
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 3.9e-07 58.2 45 60.0
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 3.9e-07 58.2 43 62.8
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 5.0e-07 57.8 43 62.8
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 5.0e-07 57.8 51 52.9
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 5.0e-07 57.8 47 57.4
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 5.0e-07 57.8 47 57.4
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 5.0e-07 57.8 51 58.8
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 5.0e-07 57.8 41 63.4
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 6.6e-07 57.4 44 59.1
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 6.6e-07 57.4 41 61.0
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 6.6e-07 57.4 41 61.0
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 6.6e-07 57.4 44 54.5
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 8.6e-07 57.0 41 61.0
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 8.6e-07 57.0 51 52.9
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 8.6e-07 57.0 42 64.3
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 8.6e-07 57.0 48 58.3
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 8.6e-07 57.0 38 68.4
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 1.1e-06 56.6 47 57.4
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 1.1e-06 56.6 47 57.4
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 1.1e-06 56.6 52 55.8
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 1.1e-06 56.6 52 59.6
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.5e-06 56.2 48 54.2
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 1.5e-06 56.2 51 52.9
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.5e-06 56.2 50 48.0
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.5e-06 56.2 45 62.2
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 1.9e-06 55.8 46 50.0
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 1.9e-06 55.8 51 51.0
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 1.9e-06 55.8 51 51.0
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.9e-06 55.8 51 54.9
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 1.9e-06 55.8 52 57.7
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 2.5e-06 55.5 49 55.1
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 4.3e-06 54.7 44 54.5
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 4.3e-06 54.7 44 54.5
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 4.3e-06 54.7 47 63.8
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 5.6e-06 54.3 41 58.5
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 7.3e-06 53.9 52 55.8
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 9.5e-06 53.5 46 56.5
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 9.5e-06 53.5 51 51.0
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 9.5e-06 53.5 51 51.0
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 9.5e-06 53.5 51 51.0
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 9.5e-06 53.5 50 52.0


User provided reference genes

Program Settings