Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.5e-175 619.4 311 100.0
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.9e-133 479.6 309 77.0
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 9.3e-133 477.2 308 76.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 6.7e-131 471.1 308 76.0
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 8.7e-131 470.7 307 74.6
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.2e-127 460.3 308 72.1
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.6e-127 459.1 309 71.2
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 4.5e-127 458.4 309 71.2
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.2e-126 456.1 308 71.1
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.1e-125 453.8 308 70.8
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.4e-125 453.4 311 71.7
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.5e-125 452.6 307 72.0
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 5.5e-125 451.4 311 71.7
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 7.1e-125 451.1 308 72.1
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 9.3e-125 450.7 307 72.0
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.6e-124 449.9 311 72.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.3e-123 446.8 310 70.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 8.7e-123 444.1 360 63.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 8.7e-123 444.1 316 70.6
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.5e-122 443.4 310 70.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.5e-122 442.6 310 70.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 4.3e-122 441.8 311 70.4
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.3e-122 441.8 330 67.6
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 7.4e-122 441.0 307 69.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.7e-121 438.7 311 70.7
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.4e-120 436.8 303 69.3
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.8e-120 436.4 310 69.4
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.0e-120 435.3 307 67.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.0e-119 433.0 310 68.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.7e-118 429.9 310 67.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.7e-118 429.9 310 67.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 4.9e-118 428.3 310 66.8
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 8.4e-118 427.6 310 67.4
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-117 426.8 308 67.5
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-117 426.8 308 67.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.9e-117 426.4 307 66.4
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 5.5e-117 424.9 310 67.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.6e-116 421.8 314 67.2
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.6e-116 421.8 308 67.5
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.0e-115 419.1 308 67.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 3.0e-115 419.1 310 66.8
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 6.7e-115 417.9 308 66.6
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 6.7e-115 417.9 310 66.8
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 6.7e-115 417.9 311 66.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 8.7e-115 417.5 310 66.5
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-114 416.8 305 66.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.7e-114 414.8 323 64.7
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 3.7e-113 412.1 309 65.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 4.8e-113 411.8 310 65.8
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 6.3e-113 411.4 308 64.0
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-112 410.6 306 65.0
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.4e-112 410.2 307 66.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.4e-112 410.2 308 65.6
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.4e-112 410.2 308 63.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-112 409.8 310 64.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 9.0e-112 407.5 308 66.2
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.5e-111 406.8 307 64.5
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.4e-111 405.6 308 65.6
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 4.5e-111 405.2 312 64.1
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 7.7e-111 404.4 307 65.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.3e-110 403.7 299 66.9
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.9e-110 402.5 269 71.4
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 5.0e-110 401.7 277 67.1
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.1e-109 400.6 308 65.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 9.4e-109 397.5 277 68.6
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.6e-108 396.7 273 67.8
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 4.6e-108 395.2 313 62.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 4.6e-108 395.2 277 68.6
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.0e-107 392.5 281 67.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 3.0e-107 392.5 276 68.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.5e-106 390.2 307 62.2
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 3.3e-106 389.0 307 62.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.7e-106 387.5 308 63.6
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 9.7e-106 387.5 277 67.1
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 3.1e-104 382.5 316 60.4
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 9.1e-104 380.9 309 61.2
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.5e-103 378.6 240 77.5
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 4.5e-103 378.6 327 57.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.7e-102 376.7 276 68.8
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.2e-102 376.3 309 59.5
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.1e-101 374.0 317 57.1
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.5e-101 372.9 327 57.5
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.2e-100 370.5 308 62.0
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.6e-100 370.2 309 60.5
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.9e-99 365.5 309 59.2
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 6.7e-99 364.8 240 75.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.7e-99 364.8 309 60.8
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.4e-98 362.1 309 59.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.4e-98 362.1 307 59.3
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 9.7e-98 360.9 320 57.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.8e-97 359.4 307 59.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.8e-97 359.4 309 59.2
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 4.8e-97 358.6 307 59.3
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 4.8e-97 358.6 276 62.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 6.3e-97 358.2 307 59.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.1e-96 357.5 271 63.8
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.4e-96 357.1 307 58.6
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.4e-96 357.1 307 58.6
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.8e-96 356.7 309 57.3
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.8e-96 356.7 307 58.6
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.1e-96 355.9 307 58.6
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.1e-96 355.9 307 58.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 7.0e-96 354.8 307 58.3
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.5e-95 353.6 307 58.3
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.0e-95 353.2 307 58.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 4.5e-95 352.1 233 75.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 4.5e-95 352.1 276 61.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.7e-94 350.1 307 58.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.5e-94 348.2 311 58.8
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.6e-92 343.6 249 67.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-90 336.3 279 59.5
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.1e-88 330.9 307 56.7
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.4e-88 330.5 246 67.5
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 5.0e-86 322.0 266 58.6
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.1e-85 320.9 257 64.2
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.6e-84 317.0 308 55.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.0e-84 314.7 277 58.1
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.2e-77 292.4 301 50.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.4e-72 277.3 276 49.6
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 7.0e-72 275.0 319 45.1
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.3e-70 270.8 315 47.0
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.3e-61 239.6 195 59.0
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.6e-53 212.2 191 56.0
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-46 191.4 195 56.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 5.1e-46 189.1 137 67.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.6e-46 188.7 170 57.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.1e-40 171.4 281 37.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.6e-38 162.2 109 67.0
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 3.5e-31 139.8 114 62.3
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.9e-29 134.0 113 57.5
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 2.8e-12 77.0 275 28.7
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.5e-10 71.2 68 57.4


User provided reference genes

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