Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.7e-161 571.2 306 100.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.1e-133 480.3 306 83.7
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-131 473.4 304 83.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.5e-130 469.2 304 84.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.3e-130 468.8 308 83.1
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 4.2e-130 468.4 306 83.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 6.1e-129 464.5 307 82.7
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.0e-128 461.8 308 74.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 5.2e-128 461.5 306 81.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 6.8e-128 461.1 304 81.9
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.5e-127 459.9 306 81.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.4e-127 458.4 305 81.6
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 3.7e-126 455.3 307 81.8
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.1e-125 453.8 305 81.0
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-125 452.2 320 79.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 5.4e-125 451.4 305 82.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.8e-124 447.6 304 76.0
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.7e-123 446.4 307 73.0
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.3e-123 446.0 309 80.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.8e-123 445.3 304 81.2
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.1e-122 443.7 305 80.7
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.1e-122 443.7 308 81.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.5e-122 442.6 309 74.4
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.3e-122 441.8 304 80.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.2e-121 440.3 309 73.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.2e-121 440.3 307 73.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.6e-121 439.9 313 72.2
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.1e-121 439.5 309 74.4
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.6e-121 438.7 309 74.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.1e-121 438.0 306 79.4
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.0e-121 437.6 312 77.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.0e-120 437.2 307 75.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.4e-120 436.8 306 80.4
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.4e-120 436.8 309 74.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.8e-120 436.4 307 77.5
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.0e-120 435.3 304 78.9
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.0e-119 433.0 300 72.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 5.8e-119 431.4 307 74.9
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 5.8e-119 431.4 309 79.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.7e-118 429.9 307 79.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.2e-118 429.5 309 70.6
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.9e-118 429.1 312 78.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.7e-118 428.7 311 73.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.7e-118 428.7 307 77.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.1e-117 427.2 311 76.8
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 7.0e-117 424.5 304 78.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.6e-116 423.3 307 76.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.5e-116 422.2 306 76.8
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 7.8e-116 421.0 316 69.3
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.0e-115 418.3 309 69.6
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 5.0e-115 418.3 285 82.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 6.6e-115 417.9 310 69.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 6.6e-115 417.9 308 69.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.5e-114 416.8 307 75.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.5e-114 416.8 311 71.4
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.9e-114 416.4 305 71.8
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 5.6e-114 414.8 310 75.2
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.2e-113 413.7 308 68.5
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-113 413.7 309 68.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.6e-113 413.3 307 73.9
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 2.1e-113 412.9 307 74.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 3.1e-112 409.1 307 67.8
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-112 407.9 308 66.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.6e-111 406.0 342 64.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 5.8e-111 404.8 318 71.4
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.2e-110 402.9 307 73.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.9e-110 402.5 337 69.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.1e-109 400.6 317 71.9
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.0e-109 397.9 310 75.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.5e-108 395.6 355 64.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.5e-108 395.6 355 64.8
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.0e-108 394.8 307 73.6
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 6.0e-108 394.8 309 72.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.3e-107 393.7 313 72.5
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.7e-107 393.3 307 72.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.0e-107 392.5 320 70.6
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.9e-107 392.1 310 71.6
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.1e-106 390.6 305 66.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 5.6e-106 388.3 306 68.0
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.3e-104 382.9 307 72.3
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.3e-104 382.9 309 70.9
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 7.5e-103 377.9 261 80.5
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 6.4e-102 374.8 319 67.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.9e-101 373.2 338 59.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 4.1e-101 372.1 281 76.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.6e-100 370.2 290 73.4
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.1e-100 369.8 307 64.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.7e-99 366.7 311 70.7
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 6.6e-99 364.8 323 65.9
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-98 364.0 308 63.3
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-98 362.5 349 62.5
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 3.3e-98 362.5 349 62.5
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.3e-98 361.3 320 65.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 9.5e-98 360.9 319 65.8
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 4.7e-97 358.6 305 61.0
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.1e-97 357.8 282 74.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 2.2e-94 349.7 257 69.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.9e-94 349.4 283 71.4
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.4e-93 347.1 307 67.4
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.9e-93 346.7 271 67.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 2.4e-93 346.3 308 58.1
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 3.2e-93 345.9 274 71.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.2e-93 344.4 285 71.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-92 344.0 256 77.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.2e-92 344.0 307 68.1
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.6e-92 342.0 256 77.0
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 6.0e-92 341.7 240 82.1
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.3e-91 340.5 263 67.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 3.4e-87 325.9 231 71.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.9e-85 320.1 214 83.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.2e-85 319.3 231 69.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.8e-84 314.7 214 82.7
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 3.9e-83 312.4 296 57.4
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.9e-77 293.5 237 65.4
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.7e-76 289.7 247 63.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.1e-74 284.3 235 72.8
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.8e-73 279.6 297 55.6
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.2e-71 274.2 233 70.0
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 7.6e-71 271.6 233 69.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.0e-70 271.2 240 70.8
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-70 271.2 214 74.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.3e-70 270.8 242 68.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.8e-70 269.2 197 80.2
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 6.2e-65 251.9 145 83.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.1e-64 249.6 233 69.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 4.0e-64 249.2 242 58.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.9e-62 243.0 231 64.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.8e-62 242.7 234 59.0
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.8e-62 242.7 234 59.0
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 5.5e-61 238.8 236 66.1
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.5e-60 236.1 290 47.2
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.5e-54 214.9 246 60.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.5e-53 213.4 243 58.8
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.2e-53 212.6 161 69.6
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.3e-50 203.0 172 62.2
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-49 200.7 146 82.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-48 195.7 149 80.5
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.9e-48 195.3 289 44.3
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 8.5e-46 188.3 326 43.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 7.9e-44 181.8 239 51.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.8e-40 170.6 327 36.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 6.5e-38 162.2 243 43.2
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.5e-37 160.2 156 69.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.6e-36 157.5 167 53.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.9e-35 152.9 74 91.9
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.7e-28 130.2 92 70.7
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 3.6e-28 129.8 73 74.0
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 6.8e-27 125.6 73 78.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 3.2e-21 106.7 91 53.8
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.4e-19 101.3 154 39.6
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.7e-17 94.4 132 32.6
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.4e-16 90.5 50 72.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.4e-16 89.4 100 50.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.6e-15 87.8 76 64.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 5.9e-15 85.9 131 39.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 4.1e-08 63.2 100 39.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.7e-07 60.5 47 66.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 7.8e-07 58.9 45 66.7


User provided reference genes

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