Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.0e-181 639.0 338 100.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.8e-124 448.7 324 76.2
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.3e-123 445.7 317 77.3
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 3.0e-121 439.1 320 76.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.6e-117 426.8 309 73.5
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 5.9e-117 424.9 261 83.1
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.0e-116 424.1 263 82.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 6.6e-116 421.4 321 72.0
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.5e-115 420.2 261 82.0
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.9e-115 419.9 312 73.7
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 5.6e-115 418.3 324 70.7
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 5.6e-115 418.3 324 70.7
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.2e-114 417.2 336 68.8
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.1e-114 416.4 323 70.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 4.7e-114 415.2 318 70.8
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.7e-114 415.2 326 70.2
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 8.0e-114 414.5 326 67.8
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 8.0e-114 414.5 258 82.2
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.0e-113 414.1 271 78.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.4e-113 413.7 269 79.6
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.8e-113 413.3 308 70.1
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 2.3e-113 412.9 326 72.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.3e-113 412.9 337 68.8
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 5.2e-113 411.8 274 79.2
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 5.2e-113 411.8 314 70.7
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 6.8e-113 411.4 326 68.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.2e-112 410.6 326 69.6
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.6e-112 409.5 325 69.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.4e-112 409.1 333 66.7
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 4.4e-112 408.7 315 71.1
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.4e-112 408.7 331 69.2
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.4e-112 408.7 263 78.3
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.8e-112 408.3 326 69.6
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 7.5e-112 407.9 261 78.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.5e-112 407.9 335 68.4
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 7.5e-112 407.9 328 67.4
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.7e-111 406.8 273 77.7
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.7e-111 406.8 319 70.2
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.2e-111 406.4 259 79.5
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.9e-111 406.0 269 78.1
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.9e-111 405.2 260 81.2
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.1e-110 404.1 257 79.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.1e-110 404.1 325 68.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.1e-110 404.1 323 69.3
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.4e-110 403.7 325 67.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.4e-110 403.7 324 67.3
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.4e-110 403.7 319 68.7
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.4e-110 403.7 261 79.7
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.9e-110 403.3 326 67.5
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 4.1e-110 402.1 326 67.2
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.1e-110 402.1 277 75.1
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 5.4e-110 401.7 326 66.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 7.0e-110 401.4 326 67.2
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 7.0e-110 401.4 324 66.7
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 9.2e-110 401.0 265 77.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.2e-109 400.6 320 68.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 1.6e-109 400.2 261 80.1
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 2.7e-109 399.4 338 64.5
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 3.5e-109 399.1 300 72.0
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.5e-109 399.1 307 70.0
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.5e-109 399.1 259 77.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 4.6e-109 398.7 295 74.9
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 6.0e-109 398.3 326 66.3
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 6.0e-109 398.3 330 65.8
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 7.8e-109 397.9 251 84.1
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.0e-108 397.5 326 67.2
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.0e-108 397.5 263 77.6
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.3e-108 397.1 261 76.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.3e-108 397.1 304 71.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.7e-108 396.7 287 71.8
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.7e-108 396.7 329 68.4
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 5.0e-108 395.2 321 67.0
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 5.0e-108 395.2 262 77.1
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 6.6e-108 394.8 329 66.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 6.6e-108 394.8 334 65.0
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.6e-108 394.8 257 78.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 8.6e-108 394.4 328 66.5
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.1e-107 394.0 378 58.7
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.9e-107 393.3 285 73.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.5e-107 392.9 353 64.6
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.3e-107 392.5 329 68.1
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.3e-107 392.1 315 68.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.6e-106 390.2 317 66.6
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.6e-106 390.2 303 70.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.8e-106 389.4 261 77.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.1e-105 387.5 316 67.4
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.7e-103 380.2 339 64.0
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.7e-103 379.0 299 68.6
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.9e-103 378.6 261 75.1
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 7.1e-102 374.8 400 57.5
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.7e-100 370.2 264 72.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.9e-100 369.0 280 71.1
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.1e-97 360.9 255 71.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 4.0e-97 359.0 317 63.1
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.0e-96 356.7 252 69.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.6e-96 356.3 233 76.8
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 7.6e-96 354.8 238 76.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 7.6e-96 354.8 238 76.9
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.9e-95 352.8 273 70.3
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.5e-91 339.7 249 72.3
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.5e-88 330.5 247 72.5
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 7.1e-86 321.6 487 43.9
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.3e-84 316.6 202 79.2
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.3e-83 312.8 248 69.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 6.2e-82 308.5 242 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 2.6e-80 303.1 260 58.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.4e-78 296.6 208 76.4
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.8e-76 290.4 260 57.3
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 6.7e-76 288.5 181 82.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 8.7e-76 288.1 300 57.0
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 9.6e-75 284.6 242 60.7
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.3e-74 284.3 245 59.2
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 4.5e-72 275.8 277 56.3
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 2.9e-71 273.1 269 50.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.4e-65 253.4 241 56.0
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.6e-61 239.2 215 64.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.7e-55 220.7 203 64.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 4.2e-54 216.1 212 59.9
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 9.3e-54 214.9 237 50.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.1e-52 209.1 208 56.2
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 8.7e-52 208.4 233 49.4
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.8e-49 200.7 311 40.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 9.4e-46 188.3 176 59.1
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 8.8e-44 181.8 312 39.1
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.5e-27 127.9 133 57.1
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 3.1e-25 120.2 98 67.3
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.0e-23 115.2 148 50.0
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 3.2e-22 110.2 80 67.5
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 6.5e-15 85.9 57 75.4
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.1e-14 85.1 53 79.2
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.8e-13 80.5 63 60.3
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 4.1e-09 66.6 43 74.4
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.3e-07 60.8 115 35.7
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 2.9e-07 60.5 87 47.1
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 5.0e-07 59.7 40 65.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 6.6e-07 59.3 125 33.6
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.3e-06 57.0 210 28.1


User provided reference genes

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