Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 3.0e-88 328.6 173 100.0
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 1.4e-85 319.7 173 96.0
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 4.3e-71 271.6 174 81.0
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 9.6e-71 270.4 181 80.7
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.3e-70 270.0 159 84.9
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 8.1e-70 267.3 171 79.5
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.9e-67 258.8 171 78.9
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 6.4e-67 257.7 161 79.5
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.4e-66 256.5 171 76.6
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 7.1e-66 254.2 173 75.1
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 7.1e-66 254.2 171 72.5
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 7.1e-66 254.2 171 74.3
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 9.3e-66 253.8 171 78.4
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.2e-65 253.4 166 74.1
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.2e-65 253.4 166 74.1
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 1.2e-65 253.4 173 71.7
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.2e-65 253.4 173 72.8
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 2.1e-65 252.7 169 73.4
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 3.5e-65 251.9 174 75.9
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.3e-64 250.0 178 73.6
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.8e-64 249.6 173 69.9
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 2.3e-64 249.2 162 75.3
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 3.0e-64 248.8 173 71.1
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 3.0e-64 248.8 173 71.1
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 3.0e-64 248.8 173 71.1
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 6.7e-64 247.7 167 77.2
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 6.7e-64 247.7 157 76.4
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 8.7e-64 247.3 171 72.5
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 8.7e-64 247.3 171 72.5
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.1e-63 246.9 171 71.9
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.1e-63 246.9 171 71.9
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 1.1e-63 246.9 164 73.8
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.5e-63 246.5 173 70.5
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 1.5e-63 246.5 169 76.3
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 3.3e-63 245.4 173 70.5
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 4.3e-63 245.0 152 80.9
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 9.6e-63 243.8 171 70.8
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 9.6e-63 243.8 173 76.3
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.6e-62 243.0 163 72.4
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.6e-62 243.0 171 75.4
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 2.1e-62 242.7 172 68.6
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 2.1e-62 242.7 172 68.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 2.1e-62 242.7 172 75.0
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.1e-62 242.7 172 72.1
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 3.7e-62 241.9 171 70.2
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.7e-62 241.9 173 69.4
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 3.7e-62 241.9 171 75.4
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 6.2e-62 241.1 147 76.9
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 8.1e-62 240.7 164 72.0
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 8.1e-62 240.7 172 74.4
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 1.1e-61 240.4 171 72.5
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 1.1e-61 240.4 171 72.5
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 1.1e-61 240.4 172 71.5
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 1.1e-61 240.4 172 71.5
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.4e-61 240.0 173 72.8
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.8e-61 239.6 164 71.3
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-61 239.6 164 71.3
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-61 239.6 164 71.3
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.4e-61 239.2 169 74.6
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.2e-60 236.9 165 69.1
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.2e-60 236.9 174 74.1
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.2e-60 236.9 174 74.1
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 1.5e-60 236.5 171 68.4
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.5e-60 236.5 169 72.2
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 1.5e-60 236.5 171 69.6
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 2.0e-60 236.1 167 71.3
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 2.0e-60 236.1 169 74.0
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.0e-60 236.1 169 72.8
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 2.0e-60 236.1 169 72.2
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 2.6e-60 235.7 171 72.5
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 2.6e-60 235.7 170 68.2
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 2.6e-60 235.7 169 72.2
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 2.6e-60 235.7 169 72.2
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.5e-60 235.0 169 72.8
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 7.6e-60 234.2 158 74.7
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.0e-59 233.8 169 72.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 2.2e-59 232.6 171 66.7
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 2.2e-59 232.6 178 66.3
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 2.9e-59 232.3 150 76.7
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 3.8e-59 231.9 171 71.9
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 4.9e-59 231.5 172 68.6
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 4.9e-59 231.5 171 71.9
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 6.5e-59 231.1 152 73.7
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 6.5e-59 231.1 141 83.7
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 6.5e-59 231.1 173 71.7
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 8.4e-59 230.7 173 69.4
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 8.4e-59 230.7 163 73.0
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 1.1e-58 230.3 171 66.1
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.4e-58 229.9 163 72.4
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 1.9e-58 229.6 175 70.9
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 3.2e-58 228.8 171 64.3
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 7.1e-58 227.6 141 76.6
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 2.7e-57 225.7 173 64.7
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 2.7e-57 225.7 160 70.0
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 3.5e-57 225.3 173 67.1
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 6.0e-57 224.6 162 67.9
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 6.0e-57 224.6 171 71.3
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 6.0e-57 224.6 178 64.6
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 7.9e-57 224.2 171 63.7
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.0e-56 223.8 155 67.7
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.3e-56 222.6 144 77.1
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.1e-55 220.3 178 69.7
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 9.6e-55 217.2 219 52.1
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 9.0e-53 210.7 145 78.6
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 3.8e-51 205.3 116 84.5
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 1.4e-50 203.4 147 74.1
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 2.5e-50 202.6 153 71.9
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 4.2e-50 201.8 157 61.1
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 3.5e-49 198.7 135 70.4
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 8.7e-48 194.1 144 72.9
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 1.1e-47 193.7 144 66.7
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 3.3e-47 192.2 169 58.6
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 1.3e-46 190.3 161 57.1
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 1.1e-45 187.2 142 69.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 1.1e-45 187.2 142 69.7
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 5.3e-45 184.9 145 68.3
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 5.9e-44 181.4 161 60.9
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.3e-43 180.3 145 66.9
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 1.7e-43 179.9 138 65.9
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.8e-43 178.7 126 71.4
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 1.1e-42 177.2 111 78.4
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.4e-42 176.8 136 68.4
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 3.2e-42 175.6 162 61.1
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.5e-39 166.8 132 65.9
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 2.0e-39 166.4 137 63.5
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.3e-39 165.6 150 64.7
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.3e-39 165.6 150 64.7
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 3.7e-38 162.2 121 68.6
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 4.1e-37 158.7 163 48.5
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 3.8e-35 152.1 81 90.1
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 3.2e-34 149.1 98 72.4
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.2e-33 147.1 98 71.4
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 3.6e-33 145.6 96 75.0
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 9.7e-31 137.5 164 53.7
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.1e-29 134.0 89 69.7
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 8.5e-27 124.4 116 64.7
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 4.2e-26 122.1 149 46.3
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 9.4e-26 120.9 161 39.8
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-23 114.0 64 82.8
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 3.1e-21 105.9 144 38.9
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 9.1e-21 104.4 142 40.1
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-19 100.1 87 58.6
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 8.8e-16 87.8 79 55.7
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 2.7e-12 76.3 75 61.3
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 5.5e-10 68.6 89 46.1
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.7e-09 65.5 55 61.8
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 3.4e-07 59.3 69 46.4
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 5.7e-07 58.5 42 66.7
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 5.7e-07 58.5 69 44.9
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 7.5e-07 58.2 31 87.1
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 9.8e-07 57.8 27 92.6
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 1.7e-06 57.0 67 44.8
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 1.7e-06 57.0 38 63.2
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 1.7e-06 57.0 67 44.8
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 1.7e-06 57.0 67 44.8
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 2.2e-06 56.6 73 39.7
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 2.8e-06 56.2 27 88.9
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 3.7e-06 55.8 67 43.3
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 8.3e-06 54.7 27 85.2


User provided reference genes

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