Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.6e-53 210.3 112 100.0
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.6e-32 142.1 88 80.7
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.6e-29 132.1 109 66.1
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.3e-28 129.8 87 79.3
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.9e-28 128.6 110 62.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.9e-27 125.9 91 67.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.5e-27 124.4 111 66.7
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 9.4e-27 123.6 82 75.6
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.2e-26 123.2 92 68.5
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.6e-26 122.9 91 63.7
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.6e-26 122.9 91 63.7
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.7e-26 122.1 94 66.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.0e-25 120.2 95 69.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.0e-25 120.2 95 69.5
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.4e-25 119.8 73 76.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.0e-25 118.6 80 70.0
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 6.7e-25 117.5 87 67.8
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-25 117.5 112 62.5
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.8e-25 117.1 95 68.4
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-24 116.7 114 56.1
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 2.6e-24 115.5 84 65.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 7.4e-24 114.0 87 66.7
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 9.7e-24 113.6 91 64.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.8e-23 112.1 89 62.9
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.7e-23 111.7 84 67.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 4.8e-23 111.3 78 66.7
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.2e-23 110.5 89 67.4
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 8.2e-23 110.5 76 78.9
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.4e-22 109.8 103 61.2
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.8e-22 109.4 85 62.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.6e-21 106.3 105 60.0
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.7e-20 102.8 84 59.5
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 3.8e-20 101.7 82 65.9
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.0e-20 101.3 77 63.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 5.0e-20 101.3 97 55.7
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 8.5e-20 100.5 87 62.1
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.2e-19 97.4 76 67.1
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.1e-18 94.4 110 50.9
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.4e-17 93.2 79 53.2
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.4e-17 93.2 100 47.0
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.0e-17 92.0 75 57.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.0e-17 92.0 73 68.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 6.7e-17 90.9 93 50.5
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-17 90.9 82 53.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 8.8e-17 90.5 75 53.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 8.8e-17 90.5 88 53.4
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.2e-16 90.1 91 48.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.5e-16 89.7 99 49.5
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.0e-16 89.4 112 46.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.0e-16 89.4 77 54.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.6e-16 89.0 80 50.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 2.6e-16 89.0 85 50.6
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 3.3e-16 88.6 81 51.9
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.4e-16 88.2 73 56.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 5.7e-16 87.8 62 59.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 7.5e-16 87.4 82 47.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 7.5e-16 87.4 97 47.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 9.7e-16 87.0 91 52.7
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 9.7e-16 87.0 78 50.0
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 9.7e-16 87.0 85 50.6
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-15 86.7 78 51.3
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.3e-15 86.7 79 51.9
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.7e-15 86.3 83 50.6
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.7e-15 86.3 73 52.1
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-15 85.9 88 50.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.8e-15 85.5 63 58.7
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.8e-15 85.5 63 58.7
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.7e-15 85.1 91 47.3
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.7e-15 85.1 79 50.6
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.8e-15 84.7 105 45.7
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.3e-15 84.3 109 41.3
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 6.3e-15 84.3 88 50.0
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 6.3e-15 84.3 78 53.8
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.2e-15 84.0 87 48.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.2e-15 84.0 87 48.3
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-14 83.6 53 69.8
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-14 83.6 75 54.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.1e-14 83.6 105 44.8
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-14 83.6 87 48.3
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-14 83.6 88 53.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.4e-14 83.2 91 49.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-14 83.2 84 50.0
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.8e-14 82.8 82 52.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.8e-14 82.8 78 51.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.8e-14 82.8 88 53.4
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.4e-14 82.4 110 45.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.4e-14 82.4 82 54.9
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.1e-14 82.0 78 48.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.1e-14 82.0 64 57.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.1e-14 82.0 107 43.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.1e-14 82.0 107 43.9
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.3e-14 81.3 121 38.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 5.3e-14 81.3 71 60.6
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.3e-14 81.3 75 50.7
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 5.3e-14 81.3 69 52.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.0e-14 80.9 64 57.8
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 9.1e-14 80.5 70 51.4
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 9.1e-14 80.5 83 51.8
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 9.1e-14 80.5 64 57.8
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 9.1e-14 80.5 84 44.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.6e-13 79.7 79 51.9
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.0e-13 79.3 85 48.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.5e-13 78.2 80 52.5
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.5e-13 78.2 112 43.8
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 5.9e-13 77.8 101 45.5
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 5.9e-13 77.8 80 47.5
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 7.7e-13 77.4 76 51.3
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.0e-12 77.0 113 40.7
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.0e-12 77.0 85 49.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.0e-12 77.0 82 50.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.0e-12 77.0 109 44.0
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.3e-12 76.6 96 45.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-12 76.6 91 48.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-12 76.3 64 48.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.9e-12 75.5 109 44.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 2.9e-12 75.5 107 43.9
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 3.8e-12 75.1 90 43.3
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.8e-12 75.1 78 51.3
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.0e-12 74.7 68 54.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 6.5e-12 74.3 54 61.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.5e-12 74.3 82 45.1
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 6.5e-12 74.3 91 41.8
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.1e-11 73.6 65 47.7
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-11 73.6 72 52.8
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 78 44.9
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.5e-11 72.4 91 44.0
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.5e-11 71.2 85 44.7
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.5e-11 71.2 82 42.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.5e-11 71.2 82 42.7
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.5e-11 71.2 71 52.1
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 5.5e-11 71.2 87 46.0
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.2e-11 70.9 113 43.4
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 9.4e-11 70.5 84 40.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.2e-10 70.1 82 42.7
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-10 69.7 88 39.8
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.1e-10 69.3 92 44.6
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.1e-10 69.3 78 44.9
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.6e-10 68.6 85 43.5
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.7e-10 68.2 51 62.7
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.0e-09 65.5 55 54.5
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 3.0e-09 65.5 46 63.0
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 4.0e-09 65.1 87 37.9
Os02g0234700 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 2.6e-08 62.4 71 42.3
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 7.5e-08 60.8 77 39.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.7e-07 59.7 108 37.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.2e-07 59.3 48 60.4
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 3.7e-07 58.5 108 34.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.8e-07 58.2 57 43.9
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.8e-07 58.2 59 45.8
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.8e-07 58.2 53 39.6
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 4.1e-06 55.1 46 54.3


User provided reference genes

Program Settings