Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 5.0e-199 697.6 354 100.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 2.2e-85 320.1 331 53.8
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 7.7e-83 311.6 313 54.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.2e-79 298.9 338 51.2
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.7e-53 214.2 312 40.4
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 8.0e-48 195.3 327 39.1
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.3e-47 193.7 320 40.3
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 2.3e-47 193.7 320 40.3
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.1e-47 193.4 332 39.5
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.9e-45 186.8 351 38.2
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.7e-45 186.4 323 37.5
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 4.1e-44 183.0 353 38.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.3e-42 177.2 297 41.8
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.0e-42 176.8 320 38.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 5.0e-42 176.0 321 38.3
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 7.3e-41 172.2 268 43.7
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 2.8e-40 170.2 364 36.3
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 3.6e-40 169.9 278 41.0
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 3.6e-40 169.9 329 36.5
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.5e-38 164.5 196 45.9
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 6.4e-37 159.1 198 45.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 6.4e-37 159.1 359 37.3
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 6.4e-37 159.1 305 38.7
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.6e-35 154.5 345 37.1
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.5e-35 153.3 322 38.8
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 4.6e-35 152.9 307 37.8
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.3e-34 151.4 272 39.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.7e-34 151.0 345 36.8
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.5e-33 147.9 269 37.5
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.9e-33 147.5 278 39.6
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 3.3e-33 146.7 274 37.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 4.3e-33 146.4 286 36.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 7.3e-33 145.6 268 36.2
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 9.5e-33 145.2 215 43.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.2e-32 144.8 395 31.9
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 2.8e-32 143.7 280 38.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 3.6e-32 143.3 193 44.0
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 8.1e-32 142.1 339 33.0
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 8.1e-32 142.1 296 36.5
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.1e-31 141.7 196 40.8
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.1e-31 141.7 329 34.7
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.5e-30 137.9 200 41.5
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 2.0e-30 137.5 384 30.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 3.4e-30 136.7 263 35.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.4e-30 136.7 278 37.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 5.8e-30 136.0 269 34.9
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 5.8e-30 136.0 192 43.2
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 5.8e-30 136.0 267 34.5
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 5.8e-30 136.0 276 33.3
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 7.5e-30 135.6 277 38.6
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 9.9e-30 135.2 218 38.1
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.7e-29 134.4 317 33.8
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 4.9e-29 132.9 281 33.8
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 4.9e-29 132.9 260 36.9
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 4.9e-29 132.9 316 34.5
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.9e-29 132.9 196 40.3
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 8.3e-29 132.1 307 34.2
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.1e-28 131.7 226 39.4
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.4e-28 131.3 338 34.3
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.4e-28 131.3 296 33.8
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.9e-28 131.0 274 35.4
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 2.4e-28 130.6 260 36.5
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 5.4e-28 129.4 256 34.8
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 7.1e-28 129.0 340 33.8
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 7.1e-28 129.0 327 32.1
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.1e-28 129.0 189 43.4
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.1e-28 129.0 333 34.2
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.2e-27 128.3 271 35.4
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.6e-27 127.9 309 32.0
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.7e-27 127.1 287 35.5
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 3.5e-27 126.7 350 32.3
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.5e-27 126.7 320 32.8
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 4.6e-27 126.3 279 34.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 4.6e-27 126.3 260 35.4
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 4.6e-27 126.3 355 33.8
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 6.0e-27 125.9 296 34.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 7.8e-27 125.6 212 39.6
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 7.8e-27 125.6 165 46.1
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.3e-26 124.8 301 31.9
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.7e-26 124.4 399 31.3
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.3e-26 124.0 191 39.8
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 2.3e-26 124.0 193 39.4
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 3.0e-26 123.6 275 33.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 3.9e-26 123.2 178 41.0
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.1e-26 122.9 212 39.6
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.1e-25 121.7 285 32.6
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.5e-25 120.6 355 30.1
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 3.3e-25 120.2 313 32.6
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 9.5e-25 118.6 370 28.6
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.6e-24 117.9 185 41.6
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.8e-23 114.4 268 32.1
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.4e-23 114.0 190 40.0
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.1e-23 113.6 336 30.4
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 4.0e-23 113.2 314 34.1
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 6.8e-23 112.5 180 37.8
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 4.4e-22 109.8 302 30.8
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 9.9e-22 108.6 183 37.2
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.3e-21 108.2 296 33.4
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.2e-20 103.6 351 30.2
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.6e-19 101.3 194 37.1
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 4.6e-19 99.8 301 29.6
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-18 98.2 188 33.5
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 3.0e-18 97.1 284 30.3
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 3.9e-18 96.7 194 35.1
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 4.3e-17 93.2 358 25.4
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.6e-16 91.3 78 44.9
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 6.9e-15 85.9 266 30.5
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.2e-14 85.1 258 29.1
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.6e-14 84.0 164 34.1
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 5.8e-14 82.8 289 30.1
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 5.8e-14 82.8 258 29.5
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.3e-13 81.6 75 42.7
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.3e-13 81.6 143 32.9
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 2.2e-13 80.9 161 34.2
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 8.4e-13 79.0 166 37.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 8.4e-13 79.0 241 29.9
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.4e-12 77.4 86 41.9
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 4.2e-12 76.6 302 29.1
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 5.4e-12 76.3 105 40.0
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.6e-11 74.7 105 35.2
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.0e-11 72.8 273 25.6
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.4e-07 61.6 62 43.5
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.8e-07 61.2 66 45.5
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.1e-07 60.5 226 31.4
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 4.0e-07 60.1 49 51.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.2e-06 58.5 77 42.9
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 1.5e-06 58.2 152 34.2


User provided reference genes

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