Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1883.6 953 100.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1521.9 955 79.2
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1432.5 1022 72.3
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1406.0 958 74.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1405.2 953 74.1
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1403.7 956 73.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 957 72.9
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 956 72.5
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1382.9 957 72.6
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1379.0 956 73.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1372.8 954 71.9
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1347.4 956 71.2
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1345.1 958 70.9
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 963 71.0
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1339.7 956 70.4
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1338.9 963 71.1
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1327.0 956 70.1
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1318.5 956 69.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1307.0 956 69.7
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1305.4 959 69.4
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1298.5 957 69.7
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1297.7 957 69.1
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1291.9 953 69.6
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1290.8 953 69.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1288.1 956 68.7
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1281.2 953 69.0
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1280.0 956 68.7
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 956 66.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 956 68.0
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 957 67.6
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1273.8 952 68.7
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1272.3 962 67.0
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 905 71.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 956 66.8
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 956 66.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1255.7 957 65.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1254.2 957 65.8
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 956 66.0
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 956 65.9
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1250.7 966 65.6
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1248.4 956 65.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1247.3 1023 63.7
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1246.1 955 65.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1241.5 953 66.5
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1241.5 956 65.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 952 66.4
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1239.2 957 65.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1236.5 956 64.5
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1235.7 956 66.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 956 66.2
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 956 64.9
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1229.5 962 66.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1228.0 956 65.5
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1227.6 956 67.2
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1226.1 956 66.5
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1225.7 991 64.4
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1222.6 956 65.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1213.0 957 63.7
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1208.7 954 64.4
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1202.6 981 63.7
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1202.6 953 64.7
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1194.9 1025 59.9
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1193.7 956 63.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1193.3 956 63.3
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1187.2 956 63.1
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1184.9 769 76.5
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1184.1 934 65.2
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1184.1 934 65.2
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1182.2 904 65.4
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1177.9 954 63.0
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1174.5 973 61.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1173.7 961 63.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1167.1 959 63.4
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1167.1 959 63.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1166.8 934 64.5
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1166.4 959 63.0
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1166.4 959 63.0
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1165.6 953 62.2
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1164.4 959 63.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1164.4 960 61.8
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1161.0 994 62.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1156.0 959 63.2
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1153.3 945 62.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1152.5 845 70.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1150.6 953 63.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1150.2 960 63.6
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1147.1 953 62.5
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1139.0 953 62.6
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1138.6 956 62.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1132.9 953 61.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1129.0 954 62.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1127.5 1019 57.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1111.7 970 60.9
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1109.7 953 60.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1101.7 953 60.9
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1100.9 957 59.0
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 953 60.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1099.7 955 60.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1091.3 955 59.8
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1091.3 850 64.5
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1077.4 955 58.1
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 4.6e-311 1071.2 798 67.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 1.9e-309 1065.8 964 59.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.4e-293 1013.1 959 55.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 9.7e-282 973.8 613 77.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 6.9e-280 967.6 680 70.9
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.7e-270 936.4 924 53.8
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.1e-264 917.1 987 50.3
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.3e-254 883.6 820 55.1
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.1e-248 862.4 595 70.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 5.0e-238 828.6 890 50.6
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.8e-228 796.2 968 45.8
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 4.4e-226 788.9 882 48.2
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.1e-212 741.5 987 43.1
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-209 734.2 980 42.2
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.4e-208 730.7 486 73.7
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.7e-201 707.2 968 41.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.6e-129 466.1 950 35.1
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 4.4e-125 453.4 956 34.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.3e-120 437.2 316 66.1
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 8.6e-105 386.0 300 63.3
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.7e-100 371.7 229 78.2
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 9.9e-93 345.9 531 41.1
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.2e-92 344.7 232 74.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.3e-86 323.6 233 71.2
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.2e-75 287.7 380 45.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 5.1e-73 280.4 1073 25.1
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.0e-70 269.6 262 55.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.5e-67 261.5 258 55.8
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 9.3e-67 259.6 230 59.1
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.5e-60 236.9 241 54.4
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.4e-59 233.0 255 52.2
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.2e-55 221.9 211 59.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-50 205.7 223 51.1
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-50 205.7 223 51.1
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-50 205.7 223 51.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.7e-50 204.1 163 61.3
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.1e-50 203.8 223 50.7
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-49 202.6 223 50.7
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-49 201.8 243 48.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 8.8e-49 199.9 166 61.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.5e-45 189.1 245 46.5
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.0e-45 188.7 245 46.5
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.2e-43 181.4 142 65.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 5.5e-43 180.6 245 45.3
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.7e-42 177.6 223 47.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.0e-29 135.6 220 36.8
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.1e-26 124.0 241 35.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.8e-24 116.7 81 71.6
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.3e-23 116.3 129 51.2
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 8.6e-20 103.6 76 68.4
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 4.7e-18 97.8 58 74.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 5.7e-16 90.9 211 28.9
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 3.1e-14 85.1 55 69.1
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.0e-13 82.4 73 58.9
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 5.2e-09 67.8 170 30.0
RcHm_v2.0_Chr5g0058211 Rosa chinensis HOM05D004846 ORTHO05D005630 7.0e-06 57.4 39 66.7


User provided reference genes

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