Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 0.0e+00 1330.5 649 100.0
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.8e-218 763.1 651 58.8
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 2.5e-204 716.1 698 53.0
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.6e-163 580.5 646 50.2
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 1.7e-160 570.5 654 49.4
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.7e-160 570.5 631 50.4
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 4.9e-160 568.9 675 47.7
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 1.8e-154 550.4 598 49.7
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 3.5e-150 536.2 634 48.3
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.5e-150 536.2 623 49.9
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.0e-149 534.6 678 45.4
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 7.3e-148 528.5 646 46.6
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.6e-147 526.2 663 46.5
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 1.1e-146 524.6 630 46.7
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 9.0e-146 521.5 634 47.2
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 5.8e-145 518.8 668 45.8
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 2.2e-144 516.9 601 48.6
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.4e-143 514.2 643 47.1
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 1.6e-142 510.8 669 44.4
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 7.9e-142 508.4 617 46.8
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.3e-141 506.9 599 47.1
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 5.1e-141 505.8 598 46.8
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 2.5e-140 503.4 598 47.3
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 5.6e-140 502.3 630 46.2
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 9.9e-137 491.5 630 46.2
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 3.8e-136 489.6 658 44.1
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.9e-135 487.3 646 44.3
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 3.5e-134 483.0 628 44.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 3.5e-134 483.0 633 44.7
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.0e-133 479.9 653 43.3
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 3.0e-133 479.9 623 45.1
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 4.3e-132 476.1 636 45.4
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 1.2e-129 468.0 630 43.5
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 5.5e-127 459.1 631 42.9
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 7.1e-127 458.8 607 44.2
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.2e-126 458.0 602 42.2
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 3.5e-126 456.4 691 40.4
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 6.0e-126 455.7 623 43.5
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 5.7e-124 449.1 715 39.6
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.1e-123 447.2 601 43.1
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.1e-122 444.9 615 43.6
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 1.4e-122 444.5 623 42.4
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.5e-121 441.0 615 41.8
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.2e-120 437.2 646 41.3
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 3.8e-120 436.4 643 41.2
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 4.2e-119 433.0 626 42.8
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 7.2e-119 432.2 636 40.6
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.6e-118 431.0 642 40.2
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.1e-116 424.9 630 41.6
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 7.4e-116 422.2 618 41.7
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.6e-115 421.0 609 42.7
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.8e-114 417.5 627 42.7
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 4.1e-114 416.4 606 39.3
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.1e-111 408.3 614 40.7
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.9e-111 407.5 600 43.3
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 3.6e-110 403.3 651 39.9
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 1.8e-109 401.0 616 39.6
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.3e-108 396.7 575 40.3
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 1.8e-106 391.0 627 39.1
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 2.4e-106 390.6 611 39.9
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 9.1e-106 388.7 607 37.4
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.6e-105 387.1 450 48.9
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.0e-104 385.2 638 37.9
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.3e-104 384.8 600 39.3
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.2e-104 384.0 599 39.2
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 4.7e-102 376.3 713 35.8
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.9e-101 373.2 638 40.6
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 1.5e-100 371.3 548 40.0
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.1e-98 365.2 601 37.3
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 4.1e-98 363.2 638 36.1
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 8.5e-96 355.5 612 37.3
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 8.5e-96 355.5 606 38.4
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 2.5e-95 354.0 456 43.6
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 3.2e-95 353.6 599 37.7
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 2.4e-90 337.4 616 35.6
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 9.1e-90 335.5 539 38.4
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.1e-87 328.6 427 45.0
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.5e-87 327.4 547 37.1
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 4.7e-86 323.2 283 57.6
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 6.1e-86 322.8 629 35.8
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 2.3e-85 320.9 593 37.4
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 2.0e-84 317.8 619 36.0
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 2.0e-84 317.8 517 36.6
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.6e-84 317.4 523 37.9
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 5.7e-84 316.2 623 36.3
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 5.7e-84 316.2 624 36.1
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.3e-83 315.1 591 36.4
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 6.3e-83 312.8 627 35.7
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.4e-82 310.8 640 35.3
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 5.4e-82 309.7 631 35.7
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 4.5e-81 306.6 627 35.4
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 7.7e-81 305.8 598 34.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 1.0e-80 305.4 630 35.7
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 2.9e-80 303.9 634 35.2
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 6.5e-80 302.8 471 40.1
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 2.5e-79 300.8 606 35.6
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 4.7e-78 296.6 613 35.1
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 4.0e-77 293.5 575 34.3
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 6.3e-75 286.2 227 60.4
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 5.0e-72 276.6 237 57.4
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.2e-67 261.2 256 50.4
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.1e-66 258.8 646 32.4
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 3.5e-65 253.8 644 29.7
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 5.0e-64 250.0 586 32.6
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 8.6e-64 249.2 605 31.4
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 4.0e-61 240.4 371 40.2
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 5.8e-60 236.5 330 41.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 8.3e-59 232.6 452 33.8
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.2e-57 228.8 466 32.8
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.5e-55 221.9 462 33.1
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 4.0e-53 213.8 292 39.0
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 3.4e-52 210.7 424 35.8
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.2e-49 202.2 404 34.2
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.3e-48 198.7 584 30.5
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 5.1e-48 196.8 163 57.1
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 2.5e-47 194.5 458 33.2
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 1.2e-46 192.2 163 55.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 7.6e-44 183.0 179 50.8
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 3.8e-43 180.6 293 39.6
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 6.4e-43 179.9 188 47.9
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 2.7e-41 174.5 400 32.0
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.5e-39 167.9 316 35.4
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 4.3e-39 167.2 232 42.2
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 6.2e-38 163.3 215 45.1
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 1.4e-37 162.2 231 42.0
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 2.0e-36 158.3 239 41.0
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 9.9e-36 156.0 307 34.5
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 4.2e-34 150.6 164 47.0
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 8.7e-32 142.9 275 34.5
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.5e-31 141.4 594 24.4
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 2.6e-28 131.3 139 47.5
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 3.4e-28 131.0 597 25.6
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-23 115.9 115 50.4
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.5e-23 114.8 469 24.5
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 5.3e-21 107.1 163 39.3
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 9.0e-13 79.7 132 37.9
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 4.9e-11 73.9 103 41.7
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 5.5e-10 70.5 234 26.5
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.2e-09 69.3 164 29.3
Atru.chr2.139 Acer truncatum HOM05D004843 ORTHO05D005833 3.9e-08 64.3 121 36.4
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 1.1e-07 62.8 89 40.4
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.6e-06 58.9 79 41.8
SHI27677 Sapria himalayana HOM05D004843 ORTHO05D005833 3.7e-06 57.8 52 46.2
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 4.8e-06 57.4 109 34.9


User provided reference genes

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