Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 0.0e+00 1079.7 642 100.0
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 9.7e-76 288.9 564 42.4
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 9.7e-68 262.3 687 37.6
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.3e-67 261.9 689 38.8
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.1e-63 248.8 600 37.2
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 2.3e-61 241.1 671 41.3
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 2.6e-60 237.7 669 38.0
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.4e-58 231.9 606 37.1
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.2e-56 224.6 553 36.3
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 3.0e-53 214.2 578 35.6
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 1.2e-49 202.2 524 36.8
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 1.7e-48 198.4 652 36.5
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 8.5e-48 196.1 522 36.2
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 7.2e-47 193.0 628 34.4
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.6e-46 191.8 617 35.8
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 2.7e-46 191.0 711 33.5
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 4.7e-46 190.3 688 33.9
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 3.0e-45 187.6 617 35.0
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.3e-43 182.2 591 34.0
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 1.3e-43 182.2 627 34.0
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 2.8e-43 181.0 619 33.3
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.8e-43 180.3 525 34.1
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 8.3e-43 179.5 634 33.9
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 4.1e-42 177.2 707 33.2
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 9.1e-42 176.0 697 34.7
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 1.3e-40 172.2 452 38.1
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 1.1e-39 169.1 611 31.8
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 9.5e-39 166.0 661 36.6
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 3.6e-38 164.1 662 34.1
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.6e-38 164.1 680 32.4
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 1.8e-37 161.8 658 34.7
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 5.2e-37 160.2 566 33.0
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 1.5e-36 158.7 658 31.0
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 9.8e-36 156.0 506 33.8
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.7e-35 155.2 659 32.8
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 1.7e-35 155.2 565 33.5
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 5.4e-34 150.2 618 31.9
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.0e-33 148.3 657 31.7
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 5.0e-32 143.7 478 31.4
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.9e-31 141.7 679 30.9
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 2.3e-29 134.8 609 31.2
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 8.9e-29 132.9 294 37.8
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 7.5e-28 129.8 636 32.9
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 3.7e-27 127.5 472 34.1
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 4.9e-27 127.1 491 30.3
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 3.5e-25 120.9 462 30.3
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 7.8e-25 119.8 480 30.6
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.3e-24 119.0 647 32.3
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 3.9e-24 117.5 470 28.7
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 5.0e-24 117.1 492 29.9
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 2.5e-23 114.8 564 29.8
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 3.3e-23 114.4 569 32.9
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 7.3e-23 113.2 469 29.0
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 9.5e-23 112.8 726 30.7
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 8.0e-22 109.8 481 31.2
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 4.0e-21 107.5 504 29.4
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 5.2e-21 107.1 638 29.8
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 1.7e-19 102.1 494 28.5
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 8.3e-19 99.8 653 29.1
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.9e-18 98.6 678 29.6
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 3.2e-18 97.8 491 29.5
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 4.1e-18 97.4 564 27.8
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 4.6e-17 94.0 527 27.5
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.1e-15 89.4 488 27.0
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 1.9e-15 88.6 588 32.1
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 3.3e-15 87.8 587 31.2
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 4.3e-15 87.4 632 29.6
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 5.6e-15 87.0 670 33.1
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 3.1e-13 81.3 65 69.2
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 6.8e-13 80.1 312 29.5
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 9.9e-12 76.3 154 41.6
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 1.3e-11 75.9 50 78.0
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 2.9e-11 74.7 642 29.9
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 3.7e-11 74.3 548 25.7
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 3.2e-10 71.2 41 85.4
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 2.1e-09 68.6 190 32.6
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 2.1e-09 68.6 359 28.7
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 8.6e-08 63.2 359 28.1
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 1.1e-07 62.8 382 26.7
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 3.3e-07 61.2 426 26.3
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 3.3e-07 61.2 460 25.7
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 7.3e-07 60.1 412 28.4
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 1.6e-06 58.9 505 25.7
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 2.1e-06 58.5 425 25.9
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 6.2e-06 57.0 429 26.1
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 8.1e-06 56.6 471 27.0


User provided reference genes

Program Settings