Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 2.2e-213 745.3 382 100.0
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 7.1e-135 484.6 385 69.4
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 3.7e-131 472.2 418 62.9
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 5.5e-127 458.4 382 64.7
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 4.6e-126 455.3 379 64.1
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 8.8e-125 451.1 377 62.3
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 5.7e-124 448.4 384 64.3
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 3.7e-123 445.7 374 63.6
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 4.8e-123 445.3 389 62.7
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 6.9e-122 441.4 383 62.9
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.0e-120 437.6 381 63.3
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 1.3e-120 437.2 388 61.3
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 3.8e-120 435.6 385 60.8
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 8.5e-120 434.5 384 62.5
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 1.9e-119 433.3 387 60.2
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 5.5e-119 431.8 382 61.3
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.8e-117 426.8 384 61.7
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.3e-117 426.4 384 61.7
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 5.1e-117 425.2 297 73.4
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 1.5e-116 423.7 316 69.0
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.3e-115 420.6 382 60.5
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 2.2e-115 419.9 386 61.1
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 2.8e-115 419.5 389 60.4
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 1.1e-114 417.5 354 63.0
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 1.4e-114 417.2 381 60.9
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 5.3e-114 415.2 298 69.5
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.2e-113 414.1 386 60.6
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.2e-113 414.1 315 68.3
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 2.2e-112 409.8 294 70.1
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 9.4e-111 404.4 384 56.8
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 1.6e-110 403.7 379 59.6
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 2.7e-110 402.9 396 57.1
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 3.6e-110 402.5 393 57.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 3.6e-110 402.5 355 60.3
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.0e-109 401.0 352 60.5
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 5.7e-108 395.2 321 63.9
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 9.7e-108 394.4 391 56.3
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.3e-107 394.0 326 63.5
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 6.3e-107 391.7 372 59.4
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 1.1e-106 391.0 369 57.2
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 1.8e-106 390.2 379 57.8
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 4.1e-106 389.0 374 57.5
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 5.3e-106 388.7 351 57.8
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 9.1e-106 387.9 349 57.6
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 9.1e-106 387.9 326 63.2
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 1.2e-105 387.5 333 61.3
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 5.9e-105 385.2 319 60.5
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 2.2e-104 383.3 380 57.6
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 8.5e-104 381.3 353 58.9
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 8.5e-104 381.3 351 60.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 8.5e-104 381.3 384 54.9
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 7.2e-103 378.3 383 56.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 1.6e-102 377.1 332 59.6
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 1.6e-102 377.1 388 55.9
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 6.1e-102 375.2 316 59.5
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 6.1e-102 375.2 316 59.5
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 8.0e-102 374.8 392 55.6
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 1.8e-101 373.6 383 54.8
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.8e-101 373.6 389 54.0
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.0e-101 372.9 393 50.4
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 3.0e-101 372.9 379 55.4
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 5.2e-101 372.1 394 55.1
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 1.5e-100 370.5 302 66.9
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 3.4e-100 369.4 278 66.9
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 4.4e-100 369.0 338 59.2
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 4.8e-99 365.5 361 55.4
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 8.3e-99 364.8 426 49.1
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 1.1e-98 364.4 390 53.3
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.1e-98 364.4 386 54.4
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 1.4e-98 364.0 393 51.1
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.4e-98 363.2 382 55.8
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 7.0e-98 361.7 346 56.9
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 3.5e-97 359.4 369 55.6
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 1.3e-96 357.5 354 55.6
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 1.3e-96 357.5 414 52.2
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 1.7e-96 357.1 387 54.3
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 1.7e-96 357.1 349 57.6
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 2.2e-96 356.7 362 55.2
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 3.8e-96 355.9 359 54.3
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 6.5e-96 355.1 293 62.1
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.5e-95 354.0 393 52.2
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 7.2e-95 351.7 356 54.8
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 3.6e-94 349.4 372 53.0
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 3.6e-94 349.4 362 54.4
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 6.1e-94 348.6 374 52.7
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 6.1e-94 348.6 362 54.4
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 1.0e-93 347.8 327 56.9
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 1.0e-93 347.8 308 58.8
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 4.0e-93 345.9 234 73.1
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.6e-92 343.2 333 58.0
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 3.4e-92 342.8 240 72.1
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 2.4e-90 336.7 298 58.4
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 2.0e-89 333.6 311 53.7
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.9e-87 327.0 390 50.8
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 4.6e-81 305.8 327 49.8
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 6.6e-80 302.0 385 48.1
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 8.6e-80 301.6 356 46.1
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 4.4e-76 289.3 246 58.9
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 7.5e-76 288.5 222 63.5
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 1.1e-66 258.1 358 42.5
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 1.2e-62 244.6 191 69.6
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 8.9e-61 238.4 281 51.2
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.9e-55 220.7 244 52.9
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 3.3e-55 219.9 170 67.1
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 4.0e-53 213.0 194 57.2
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 1.1e-45 188.3 198 49.5
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 9.9e-44 181.8 324 37.7
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 1.7e-43 181.0 354 35.3
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 2.2e-43 180.6 183 54.1
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 1.4e-42 177.9 262 38.9
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.6e-41 174.5 298 35.9
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.3e-40 171.4 255 39.2
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-40 171.0 265 37.4
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 3.0e-40 170.2 189 48.7
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 3.9e-40 169.9 147 63.9
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.5e-39 167.2 240 38.3
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.1e-37 161.8 244 40.2
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 3.8e-35 153.3 255 36.5
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 2.4e-34 150.6 149 50.3
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 7.1e-34 149.1 304 31.2
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.8e-32 144.4 136 52.2
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 6.2e-30 136.0 261 31.8
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 7.6e-28 129.0 125 53.6
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 2.2e-27 127.5 163 45.4
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.9e-18 97.8 202 30.7
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 2.5e-15 87.4 132 43.9
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 2.0e-07 61.2 90 44.4
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.7e-06 58.2 52 50.0
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 4.8e-06 56.6 52 48.1


User provided reference genes

Program Settings