Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 1.2e-58 229.9 111 100.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.9e-35 152.9 115 64.3
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 4.3e-35 151.8 113 69.0
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 1.6e-34 149.8 112 67.0
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.6e-34 149.8 113 69.9
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 6.2e-34 147.9 111 65.8
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 1.8e-33 146.4 111 64.0
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 8.9e-33 144.1 111 66.7
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 1.5e-32 143.3 108 63.0
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 2.6e-32 142.5 116 61.2
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.3e-31 140.2 106 67.0
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.2e-31 139.4 108 61.1
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 3.8e-31 138.7 121 62.8
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 3.8e-31 138.7 108 63.9
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 4.1e-30 135.2 125 62.4
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.2e-29 133.7 131 56.5
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.6e-29 133.3 113 58.4
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 2.1e-29 132.9 113 65.5
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.5e-29 132.1 113 58.4
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.5e-29 132.1 115 61.7
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 4.6e-29 131.7 112 58.9
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 4.6e-29 131.7 113 57.5
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 6.0e-29 131.3 119 54.6
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.3e-28 130.2 108 62.0
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 1.7e-28 129.8 118 55.9
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 2.3e-28 129.4 120 56.7
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 3.0e-28 129.0 111 58.6
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 3.9e-28 128.6 120 55.8
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 5.1e-28 128.3 100 66.0
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 6.6e-28 127.9 121 55.4
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 8.7e-28 127.5 104 58.7
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 8.7e-28 127.5 115 56.5
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.3e-27 125.6 123 57.7
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.3e-27 125.2 124 57.3
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 4.3e-27 125.2 122 54.9
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 5.6e-27 124.8 107 56.1
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 5.6e-27 124.8 111 55.9
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 7.3e-27 124.4 111 60.4
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 9.6e-27 124.0 123 56.9
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 9.6e-27 124.0 110 56.4
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-26 123.6 123 56.9
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-26 123.6 123 56.9
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.6e-26 123.2 123 56.9
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.6e-26 123.2 113 54.9
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.1e-26 122.9 123 56.9
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 2.8e-26 122.5 116 54.3
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 8.1e-26 120.9 110 54.5
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 1.8e-25 119.8 116 58.6
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.8e-25 119.8 123 56.1
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-24 117.1 123 54.5
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.0e-24 116.3 123 53.7
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.0e-24 116.3 123 53.7
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 3.4e-24 115.5 110 51.8
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 4.4e-24 115.2 78 66.7
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 4.4e-24 115.2 105 56.2
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 9.9e-24 114.0 82 65.9
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 9.9e-24 114.0 123 52.8
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.3e-23 113.6 114 55.3
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.7e-23 113.2 114 55.3
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 3.8e-23 112.1 117 52.1
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 4.9e-23 111.7 115 52.2
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 8.4e-23 110.9 85 62.4
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 1.1e-22 110.5 120 53.3
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.1e-22 110.5 114 50.9
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 3.2e-22 109.0 108 52.8
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.6e-21 106.7 114 52.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.7e-21 105.9 115 50.4
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 1.7e-20 103.2 83 62.7
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 1.7e-20 103.2 103 54.4
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.3e-20 102.8 74 64.9
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.9e-20 102.1 89 57.3
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 3.9e-20 102.1 119 48.7
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 5.1e-20 101.7 103 54.4
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 9.6e-19 97.4 119 43.7
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.3e-18 97.1 115 48.7
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.3e-18 97.1 122 45.1
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 2.1e-18 96.3 120 46.7
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 2.1e-18 96.3 120 45.8
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 2.1e-18 96.3 121 46.3
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 2.1e-18 96.3 120 45.8
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 2.8e-18 95.9 120 45.8
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 3.6e-18 95.5 120 45.0
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 4.8e-18 95.1 122 42.6
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 4.8e-18 95.1 112 46.4
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 8.1e-18 94.4 121 47.1
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 1.1e-17 94.0 120 43.3
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.1e-17 94.0 120 43.3
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.1e-17 94.0 120 43.3
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 2.4e-17 92.8 92 53.3
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 6.9e-17 91.3 113 45.1
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.4e-16 89.0 120 43.3
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 3.4e-16 89.0 117 45.3
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 7.6e-16 87.8 93 51.6
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 1.3e-15 87.0 107 43.9
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 1.7e-15 86.7 68 54.4
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 3.8e-15 85.5 112 43.8
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 4.9e-15 85.1 101 43.6
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.9e-14 83.2 67 58.2
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.7e-13 79.3 112 41.1
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 3.5e-13 79.0 55 60.0
HPP92_020058 Vanilla planifolia HOM05D003240 ORTHO05D009426 3.4e-08 62.4 68 48.5
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 9.9e-08 60.8 122 35.2
Aqoxy4G01347 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.7e-07 60.1 92 39.1
Aqoxy4G01492 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 3.8e-07 58.9 118 33.1
Aqoxy4G01348 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.4e-06 57.0 120 35.8
Potri.010G228100 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.4e-06 56.2 117 35.0
Solyc02g036220.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 4.2e-06 55.5 97 33.0
Thecc.06G225500 Theobroma cacao HOM05D002014 ORTHO05D001958 4.2e-06 55.5 124 31.5
Aqoxy3G01943 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 5.5e-06 55.1 115 33.9
Nn5g28102 Nelumbo nucifera HOM05D002014 ORTHO05D001958 5.5e-06 55.1 87 41.4
Sabra04G0004000 Salix brachista HOM05D002014 ORTHO05D001958 5.5e-06 55.1 88 35.2
TAR626G0649 Trochodendron aralioides HOM05D002014 ORTHO05D001958 5.5e-06 55.1 79 36.7
Lj6g0008980 Lotus japonicus HOM05D002014 ORTHO05D001958 7.1e-06 54.7 107 37.4
Nn1g07227 Nelumbo nucifera HOM05D002014 ORTHO05D001958 7.1e-06 54.7 88 38.6
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 7.1e-06 54.7 97 32.0
Dinv13928 Davidia involucrata HOM05D002014 ORTHO05D001958 9.3e-06 54.3 115 30.4
Thecc.06G225300 Theobroma cacao HOM05D002014 ORTHO05D001958 9.3e-06 54.3 124 31.5


User provided reference genes

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