Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.3e-73 279.6 140 100.0
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.3e-49 199.9 126 76.2
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.8e-49 198.4 139 71.2
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.4e-49 197.6 139 70.5
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.4e-49 197.6 139 70.5
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.4e-49 197.6 139 70.5
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.4e-49 197.2 139 70.5
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-48 196.8 139 70.5
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-48 196.1 139 69.8
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-48 196.1 139 69.8
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.4e-48 195.7 126 74.6
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.4e-48 194.5 139 69.8
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.2e-48 193.7 136 71.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.7e-47 192.2 129 71.3
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.7e-47 192.2 129 75.2
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 3.5e-47 191.8 137 72.3
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.8e-47 190.7 146 67.1
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.0e-46 190.3 112 79.5
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.7e-46 189.5 126 73.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 2.3e-46 189.1 135 71.1
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 6.6e-46 187.6 110 80.9
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 8.6e-46 187.2 140 68.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 8.6e-46 187.2 145 68.3
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.1e-45 186.8 123 75.6
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-45 186.4 139 67.6
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.9e-45 186.0 139 68.3
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.9e-45 186.0 139 67.6
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.3e-45 185.3 123 74.0
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 3.3e-45 185.3 122 74.6
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 7.3e-45 184.1 125 73.6
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.6e-45 183.7 139 66.9
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.4e-43 179.1 111 75.7
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.1e-43 178.7 122 70.5
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 5.2e-43 177.9 124 75.0
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.5e-42 176.4 133 65.4
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-42 175.6 112 75.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 3.4e-42 175.3 130 66.9
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 7.6e-42 174.1 117 71.8
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 9.9e-42 173.7 150 61.3
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.3e-41 173.3 133 63.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.3e-41 173.3 126 65.1
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.8e-41 171.8 130 66.9
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 4.9e-41 171.4 124 67.7
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 4.9e-41 171.4 137 64.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 8.4e-41 170.6 120 67.5
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 8.4e-41 170.6 127 63.8
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.1e-40 170.2 120 67.5
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.9e-40 169.5 114 73.7
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 3.2e-40 168.7 129 65.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 4.2e-40 168.3 114 73.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 4.2e-40 168.3 120 65.0
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 5.4e-40 167.9 115 69.6
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 9.3e-40 167.2 134 64.9
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 9.3e-40 167.2 111 73.0
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.2e-39 166.8 139 61.2
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.7e-39 165.6 129 63.6
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 3.5e-39 165.2 127 64.6
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.0e-38 163.7 118 66.9
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.7e-38 162.9 133 62.4
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.7e-38 162.9 113 69.0
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 5.1e-38 161.4 121 63.6
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.1e-37 160.2 116 65.5
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.5e-37 159.1 121 64.5
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 5.6e-37 157.9 140 57.1
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.3e-36 156.8 121 62.0
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.2e-36 154.5 138 57.2
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 2.4e-35 152.5 130 58.5
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 5.3e-35 151.4 156 50.6
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 5.3e-35 151.4 137 57.7
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 5.3e-35 151.4 124 59.7
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 1.5e-34 149.8 127 58.3
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 3.4e-34 148.7 121 62.8
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-33 146.0 95 73.7
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 6.4e-33 144.4 134 58.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 6.4e-33 144.4 134 58.2
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.1e-32 143.7 132 59.8
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.2e-31 140.2 91 71.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 2.7e-31 139.0 127 58.3
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 1.0e-30 137.1 130 57.7
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.8e-30 136.3 95 71.6
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 3.0e-30 135.6 113 61.9
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 8.7e-30 134.0 126 54.0
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 4.3e-29 131.7 213 38.5
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 7.4e-29 131.0 123 56.1
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.4e-27 126.7 119 57.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.4e-27 125.9 107 62.6
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.1e-27 125.6 113 60.2
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 5.3e-27 124.8 88 63.6
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 2.6e-26 122.5 119 55.5
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.6e-26 122.5 125 52.0
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.6e-26 122.5 130 56.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 3.4e-26 122.1 126 52.4
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.8e-26 121.3 94 64.9
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 7.6e-26 120.9 111 55.9
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 4.9e-25 118.2 116 50.9
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 6.4e-25 117.9 80 70.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 6.4e-25 117.9 118 54.2
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.1e-24 117.1 119 55.5
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.4e-24 115.9 121 53.7
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.5e-24 114.8 123 51.2
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.2e-23 113.6 123 47.2
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.6e-23 113.2 127 48.8
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.6e-23 113.2 121 50.4
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.1e-23 112.8 121 52.9
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.1e-23 112.8 125 47.2
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 4.6e-23 111.7 115 50.4
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.6e-23 111.7 122 48.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.8e-22 109.8 124 49.2
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 3.9e-22 108.6 111 56.8
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 8.7e-22 107.5 105 53.3
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.9e-21 106.3 117 51.3
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.3e-21 105.1 123 48.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 5.6e-21 104.8 121 45.5
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 5.6e-21 104.8 115 52.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 9.6e-21 104.0 117 48.7
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 9.0e-19 97.4 77 59.7
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.2e-18 97.1 87 59.8
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.5e-18 96.7 78 57.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.4e-18 95.5 74 64.9
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 4.5e-18 95.1 111 49.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 8.4e-17 90.9 84 54.8
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 1.2e-15 87.0 105 46.7
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.6e-15 86.7 125 44.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.1e-15 86.3 62 59.7
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 4.6e-15 85.1 87 51.7
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 7.4e-13 77.8 117 40.2
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.8e-12 75.9 108 40.7
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 8.2e-12 74.3 48 72.9
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.9e-11 71.2 54 59.3
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.0e-11 70.9 58 62.1
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.5e-10 68.6 58 60.3
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 1.0e-09 67.4 50 62.0
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 8.5e-09 64.3 65 44.6
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.5e-08 62.8 79 43.0
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.2e-08 62.4 79 43.0
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.5e-08 61.6 64 50.0
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.7e-07 59.3 47 66.0


User provided reference genes

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