Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 1.0e-182 643.3 327 100.0
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.8e-163 579.3 314 92.7
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.1e-139 497.3 318 80.5
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.2e-138 496.9 316 80.4
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.6e-138 496.5 316 81.0
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.8e-131 473.0 306 80.4
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 4.1e-131 471.9 299 80.3
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.4e-131 471.5 299 79.9
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 9.1e-131 470.7 299 80.3
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.2e-130 470.3 299 80.3
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.5e-130 468.8 299 80.3
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.5e-130 468.8 299 80.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 5.9e-130 468.0 300 81.0
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 7.7e-130 467.6 299 79.9
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.3e-128 462.2 299 79.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.2e-128 461.8 299 78.9
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.6e-127 458.8 299 78.3
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.1e-127 458.0 299 78.6
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.4e-125 452.2 299 78.3
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.7e-125 451.4 299 76.6
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.2e-124 449.5 298 78.2
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.4e-123 446.8 302 77.2
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.0e-122 443.0 298 76.2
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.0e-122 443.0 298 76.2
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.7e-122 442.6 299 76.3
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.7e-122 442.6 298 76.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.3e-121 440.3 303 75.2
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.9e-121 439.1 298 76.5
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 5.0e-121 438.3 295 76.9
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.0e-121 438.3 299 75.9
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 5.0e-121 438.3 298 75.5
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 6.6e-121 438.0 298 76.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 8.6e-121 437.6 299 74.2
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.1e-120 437.2 297 75.1
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.1e-120 437.2 298 75.2
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.5e-120 436.0 300 75.3
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.5e-120 436.0 299 75.3
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 3.3e-120 435.6 299 75.6
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.6e-120 434.9 299 75.3
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.6e-120 434.9 302 73.2
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 9.5e-120 434.1 299 74.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 9.5e-120 434.1 299 74.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 9.5e-120 434.1 299 74.9
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 9.5e-120 434.1 300 74.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.2e-119 433.7 297 75.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-119 433.0 299 74.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.8e-119 432.6 299 74.6
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 4.7e-119 431.8 297 74.7
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.7e-119 431.8 299 74.6
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.0e-119 431.0 297 74.7
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 8.0e-119 431.0 297 74.7
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.0e-118 430.6 300 75.3
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.0e-118 430.6 300 74.3
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-118 430.3 300 74.3
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.4e-118 430.3 306 73.5
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.3e-118 429.5 297 74.4
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.3e-118 429.5 297 76.1
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 3.1e-118 429.1 298 74.2
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.0e-118 428.7 299 74.2
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 4.0e-118 428.7 297 74.4
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.0e-118 428.7 299 74.2
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 5.2e-118 428.3 291 76.3
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 6.8e-118 427.9 300 74.7
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 8.9e-118 427.6 300 74.7
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.2e-117 427.2 298 75.2
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.4e-117 425.6 299 73.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.4e-117 425.2 300 73.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.3e-116 423.7 299 72.6
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.3e-116 423.7 299 72.2
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.3e-116 423.7 299 74.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-116 422.9 299 73.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.9e-116 422.5 299 71.9
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.7e-116 422.2 299 73.2
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 3.7e-116 422.2 299 73.2
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.9e-116 421.8 297 74.7
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 6.4e-116 421.4 306 72.2
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 6.4e-116 421.4 300 73.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.4e-116 421.4 297 73.7
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.9e-115 419.9 299 73.6
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.2e-115 419.1 297 75.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 3.2e-115 419.1 314 67.5
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 5.4e-115 418.3 297 71.7
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 7.0e-115 417.9 306 70.9
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.2e-115 417.5 298 72.1
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 9.2e-115 417.5 299 72.2
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.2e-114 417.2 301 73.1
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.7e-114 416.0 301 72.8
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 2.7e-114 416.0 286 75.2
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 2.7e-114 416.0 297 74.7
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 3.5e-114 415.6 299 72.2
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 3.5e-114 415.6 287 76.3
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 3.5e-114 415.6 297 73.1
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.6e-114 415.2 299 71.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.0e-113 414.1 286 74.8
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.0e-113 414.1 300 71.3
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-113 413.7 286 74.8
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.3e-113 412.9 283 75.3
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 5.0e-113 411.8 303 70.3
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.3e-112 409.1 297 70.7
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.3e-112 409.1 299 72.6
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 5.6e-112 408.3 302 71.2
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.1e-111 406.4 297 70.4
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.1e-111 406.4 302 71.5
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.1e-110 402.5 297 71.7
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.1e-110 402.5 297 70.4
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 3.1e-110 402.5 297 69.4
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 3.1e-110 402.5 297 69.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.2e-110 401.7 286 72.4
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 6.8e-110 401.4 297 70.4
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 6.8e-110 401.4 297 69.7
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.2e-109 400.6 301 71.4
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.6e-109 399.4 302 69.9
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.1e-107 394.0 298 70.8
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.4e-107 391.7 298 70.8
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.2e-106 390.6 298 68.1
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.6e-106 390.2 303 69.3
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.7e-106 389.4 297 69.4
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.8e-106 387.9 278 71.6
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.3e-105 387.1 304 68.1
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.3e-105 387.1 302 70.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 5.1e-105 385.2 304 68.1
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.9e-104 383.3 289 70.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.5e-104 382.9 303 67.0
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.2e-103 378.3 299 65.9
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.1e-102 377.5 284 72.2
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.4e-102 377.1 303 67.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 6.8e-102 374.8 302 64.2
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.2e-101 374.0 303 66.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.2e-99 365.9 297 68.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 5.4e-99 365.2 299 66.2
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.1e-98 363.2 298 67.8
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 6.6e-97 358.2 298 66.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 4.3e-96 355.5 301 63.1
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.6e-96 355.1 299 63.5
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.2e-95 354.0 294 62.9
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.6e-95 353.6 299 64.2
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 6.2e-95 351.7 268 67.9
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 6.2e-95 351.7 299 63.9
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.2e-93 347.4 309 61.2
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 2.0e-93 346.7 298 65.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.2e-92 343.2 300 61.3
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.4e-91 340.5 300 60.7
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.3e-88 329.3 252 68.7
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.1e-82 310.1 301 59.1
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.5e-82 309.3 312 55.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.8e-79 299.7 221 73.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 4.9e-76 288.9 286 54.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.2e-74 284.3 287 55.1
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 7.4e-72 275.0 202 73.8
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 8.2e-63 245.0 274 52.6
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 8.4e-60 235.0 143 81.8
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 4.6e-58 229.2 280 46.1
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.8e-55 219.9 285 48.1
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 5.9e-53 212.2 173 68.8
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.2e-52 210.3 152 71.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 3.1e-46 189.9 128 71.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 3.0e-41 173.3 152 64.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.1e-30 138.3 107 65.4
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 8.5e-28 128.6 117 59.0
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 5.5e-27 125.9 337 30.6
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.8e-25 119.0 115 56.5
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 5.7e-24 115.9 83 73.5
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 5.0e-20 102.8 101 57.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 4.4e-16 89.7 73 60.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 5.6e-11 72.8 92 48.9
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.0e-09 68.6 75 52.0
Ca_04590_v3 Cicer arietinum L. HOM05D005748 ORTHO05D007123 6.8e-09 65.9 150 33.3
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 1.7e-07 61.2 152 36.2
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 3.7e-07 60.1 142 31.7
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 4.9e-07 59.7 152 30.3
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 1.1e-06 58.5 152 32.9
TPR.G22385 Trifolium pratense HOM05D005748 ORTHO05D007123 1.8e-06 57.8 130 33.1
PGR119G1070 Punica granatum HOM05D005748 ORTHO05D007123 2.4e-06 57.4 123 35.8
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 2.4e-06 57.4 152 34.9
THA.LOC104822157 Tarenaya hassleriana HOM05D005748 ORTHO05D007123 3.2e-06 57.0 132 35.6
Cc11_g15440 Coffea canephora HOM05D005748 ORTHO05D007123 5.4e-06 56.2 123 36.6
Lalb_Chr16g0382091 Lupinus albus HOM05D005748 ORTHO05D007123 5.4e-06 56.2 128 32.8
Sp1g20810 Schrenkiella parvula HOM05D005748 ORTHO05D007123 9.2e-06 55.5 123 36.6


User provided reference genes

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