Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 2.8e-157 558.5 278 100.0
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 5.6e-129 464.5 278 83.8
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 5.2e-127 458.0 278 80.9
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 8.9e-127 457.2 278 80.6
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 7.5e-118 427.6 278 75.2
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 7.5e-118 427.6 278 74.8
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.7e-117 426.4 278 75.9
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 2.9e-117 425.6 280 75.0
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.9e-117 424.9 278 72.7
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.9e-116 422.9 278 71.9
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.2e-116 422.2 280 74.3
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.1e-115 419.5 280 74.6
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.5e-115 418.7 271 75.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.9e-114 415.2 278 73.0
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.9e-114 415.2 278 73.4
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.5e-113 413.3 276 73.6
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 4.3e-113 411.8 279 72.0
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.6e-113 411.4 274 72.6
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 5.6e-113 411.4 240 80.8
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 7.3e-113 411.0 278 71.6
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 7.3e-113 411.0 280 71.8
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 7.3e-113 411.0 279 73.8
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.5e-113 410.6 278 73.0
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.1e-112 409.5 279 72.0
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.1e-112 409.5 282 72.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 3.6e-112 408.7 278 71.2
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 4.7e-112 408.3 279 72.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.2e-112 407.9 279 73.5
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 8.1e-112 407.5 279 70.6
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.1e-111 407.1 279 71.3
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.4e-111 406.8 278 70.9
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.1e-111 405.6 278 69.4
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 4.0e-111 405.2 278 71.6
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 5.2e-111 404.8 279 70.3
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 6.8e-111 404.4 281 72.6
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.5e-110 403.3 278 69.8
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.5e-110 403.3 278 69.8
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 1.5e-110 403.3 280 68.9
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-110 402.9 278 71.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.0e-110 402.9 278 71.9
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 2.6e-110 402.5 278 70.9
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 5.8e-110 401.4 281 70.5
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 9.9e-110 400.6 278 68.0
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.3e-109 400.2 278 68.3
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.7e-109 399.8 278 70.1
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.9e-109 399.1 278 69.1
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.1e-108 397.1 278 70.1
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.1e-108 397.1 279 70.3
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.4e-108 396.7 278 67.6
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-108 396.7 278 69.8
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.4e-108 396.0 278 70.5
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 5.4e-108 394.8 278 67.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.6e-107 393.3 274 69.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-107 393.3 278 69.4
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.5e-107 392.1 280 69.3
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.5e-107 392.1 278 67.6
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 4.6e-107 391.7 277 67.5
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 4.6e-107 391.7 276 68.5
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.8e-107 391.0 281 69.0
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.3e-106 390.2 286 66.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 2.3e-106 389.4 277 66.8
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.3e-106 389.4 278 68.3
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 3.9e-106 388.7 281 69.0
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 6.6e-106 387.9 278 67.3
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 8.7e-106 387.5 277 69.0
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 8.7e-106 387.5 279 68.8
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.1e-105 387.1 278 68.7
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.5e-105 386.7 279 67.7
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.9e-105 386.3 282 67.7
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.3e-105 385.6 234 76.9
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.3e-105 385.6 278 65.8
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 3.3e-105 385.6 271 69.7
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 7.3e-105 384.4 277 68.6
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 9.6e-105 384.0 278 67.6
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.2e-104 383.6 280 67.5
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.1e-104 382.9 286 65.7
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.1e-104 382.9 279 68.8
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 3.1e-103 379.0 286 66.4
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 3.1e-103 379.0 286 66.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 3.1e-103 379.0 283 65.7
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.3e-103 378.3 279 65.9
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 5.3e-103 378.3 287 66.2
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 5.3e-103 378.3 280 67.1
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 6.9e-103 377.9 287 66.2
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 9.0e-103 377.5 287 64.5
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 9.0e-103 377.5 287 66.2
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.5e-102 376.7 286 65.7
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.0e-102 376.3 280 66.8
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 2.6e-102 375.9 279 67.0
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.4e-102 375.6 288 65.3
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.4e-102 375.2 283 63.6
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 4.4e-102 375.2 279 64.9
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.6e-102 374.4 286 64.7
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 7.6e-102 374.4 287 65.9
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.7e-101 373.2 278 66.5
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.7e-101 373.2 276 65.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.2e-101 372.9 286 65.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 2.2e-101 372.9 280 64.3
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 2.2e-101 372.9 280 64.3
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.2e-101 372.9 283 64.0
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 2.2e-101 372.9 278 64.7
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.2e-101 372.9 287 65.2
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 3.8e-101 372.1 286 64.7
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 3.8e-101 372.1 286 64.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 4.9e-101 371.7 279 63.1
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.1e-100 370.5 287 63.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.4e-100 369.4 279 63.4
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.4e-100 369.4 237 76.4
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 5.4e-100 368.2 312 61.5
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 7.1e-100 367.9 286 64.3
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 2.7e-99 365.9 289 63.7
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 2.7e-99 365.9 289 63.7
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 4.6e-99 365.2 287 63.1
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 4.6e-99 365.2 287 62.7
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.9e-98 362.1 287 62.4
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 6.6e-98 361.3 287 61.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 8.7e-98 360.9 287 63.1
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-97 360.5 291 63.6
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.5e-97 359.4 288 62.8
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.5e-97 359.4 288 62.8
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 4.3e-97 358.6 274 63.5
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.6e-97 358.2 278 60.1
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 7.3e-97 357.8 274 61.7
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 9.6e-97 357.5 279 63.8
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-96 356.7 288 62.2
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.6e-96 356.7 280 62.9
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-95 354.0 289 61.6
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.1e-95 354.0 289 61.6
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 3.1e-95 352.4 280 64.6
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 9.0e-95 350.9 297 57.6
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.2e-94 350.5 234 69.7
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 2.6e-94 349.4 284 61.3
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.4e-94 349.0 278 61.5
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 7.6e-94 347.8 279 60.9
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 1.4e-92 343.6 278 62.6
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.0e-90 337.4 278 60.4
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.1e-89 334.0 278 62.2
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.5e-89 333.6 278 61.9
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 2.5e-89 332.8 278 59.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 8.1e-88 327.8 280 56.8
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.1e-87 327.4 279 58.8
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 5.8e-86 321.6 185 81.6
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.3e-85 320.5 255 62.7
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 3.0e-82 309.3 236 63.1
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.6e-81 305.1 251 62.2
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 3.4e-78 295.8 288 51.7
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 3.8e-77 292.4 279 52.7
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.9e-77 292.0 265 53.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.1e-75 286.6 198 68.2
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 2.9e-69 266.2 287 48.1
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 8.8e-66 254.6 186 65.6
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.5e-62 243.8 235 51.1
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 7.7e-62 241.5 235 47.2
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 5.0e-61 238.8 183 66.7
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 7.4e-57 224.9 162 69.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 1.3e-56 224.2 284 39.8
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 4.8e-56 222.2 160 67.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 4.2e-52 209.1 162 61.7
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.2e-50 202.2 247 47.0
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.1e-47 194.5 178 59.0
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.5e-44 183.3 216 43.5
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 3.1e-39 166.4 234 36.3
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 3.2e-36 156.4 141 58.2
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-35 154.5 141 57.4
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-35 154.5 141 57.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-22 109.8 121 43.0
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 7.8e-22 108.6 118 50.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.6e-19 100.9 74 63.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.9e-18 95.1 185 34.1


User provided reference genes

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