Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.2e-114 415.6 206 100.0
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 3.7e-85 318.5 194 78.4
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 4.5e-83 311.6 198 77.8
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 5.5e-81 304.7 202 74.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.7e-80 302.4 192 75.0
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 6.0e-80 301.2 192 75.5
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 6.0e-80 301.2 193 74.1
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 6.0e-80 301.2 193 74.1
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 1.3e-79 300.1 191 76.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 3.0e-79 298.9 191 75.9
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 6.7e-79 297.7 192 75.0
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.5e-78 296.6 193 73.1
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.5e-78 296.6 189 74.1
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.8e-77 292.4 189 74.1
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 3.7e-77 292.0 191 73.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 8.2e-77 290.8 193 73.1
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.1e-76 290.4 194 72.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.4e-76 290.0 194 71.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.8e-76 289.7 194 72.2
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.8e-76 289.7 190 73.7
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 2.4e-76 289.3 193 71.0
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.4e-76 289.3 194 71.1
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 4.1e-76 288.5 199 70.4
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 5.3e-76 288.1 196 72.4
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 6.9e-76 287.7 192 70.8
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.9e-76 287.7 200 70.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 6.9e-76 287.7 192 73.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.2e-75 287.0 196 70.9
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.2e-75 287.0 194 70.1
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.6e-75 285.8 194 71.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 4.5e-75 285.0 196 71.4
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 4.5e-75 285.0 204 69.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 4.5e-75 285.0 193 72.0
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.6e-75 284.3 191 71.7
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.0e-74 283.9 196 71.4
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.3e-74 283.5 192 73.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.3e-74 283.5 194 71.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 2.2e-74 282.7 193 70.5
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.9e-74 282.3 196 71.9
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.9e-74 282.3 196 71.9
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.0e-74 281.6 195 71.8
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 6.5e-74 281.2 194 71.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 8.5e-74 280.8 195 71.3
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.5e-74 280.8 192 69.8
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.1e-73 280.4 200 68.0
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.1e-73 280.4 187 71.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.4e-73 280.0 190 71.6
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.9e-73 279.6 190 71.6
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.5e-73 279.3 190 71.1
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 3.2e-73 278.9 194 70.6
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.2e-72 276.9 200 68.5
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.6e-72 276.6 200 68.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.7e-72 275.8 204 66.2
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 3.6e-72 275.4 198 67.7
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 4.6e-72 275.0 189 70.9
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 7.9e-72 274.2 182 72.5
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.3e-71 273.5 196 69.4
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 6.7e-71 271.2 191 68.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 8.7e-71 270.8 194 68.0
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 8.7e-71 270.8 190 70.0
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.1e-70 270.4 199 66.3
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.1e-70 270.4 201 66.2
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.5e-70 270.0 198 68.2
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.5e-70 270.0 180 72.8
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 5.7e-70 268.1 189 66.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 9.7e-70 267.3 195 67.7
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.7e-69 265.4 194 66.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 4.8e-69 265.0 187 69.0
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-68 263.8 188 68.1
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.4e-68 263.5 191 69.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.1e-68 261.9 189 67.2
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.2e-67 260.4 193 66.8
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.2e-67 260.4 207 62.8
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.8e-66 255.4 178 68.5
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.1e-65 253.8 205 64.4
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.2e-65 252.3 189 64.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 5.5e-65 251.5 191 63.4
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.1e-64 249.6 165 72.7
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 2.7e-64 249.2 190 64.2
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.6e-64 248.4 191 66.0
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.6e-64 248.4 187 65.2
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 7.9e-64 247.7 165 72.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.5e-59 233.4 174 64.9
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.0e-58 230.7 169 65.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 3.6e-56 222.2 187 58.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 4.7e-56 221.9 193 58.0
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.1e-54 217.2 205 53.7
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.0e-54 216.5 189 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 6.3e-53 211.5 196 54.6
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.2e-51 207.2 148 67.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 6.5e-50 201.4 191 57.1
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.0e-47 194.1 188 51.6
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 3.0e-47 192.6 195 49.7
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 5.2e-47 191.8 200 53.0
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.2e-47 191.8 163 60.7
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-35 152.1 90 80.0
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.7e-32 142.1 145 50.3
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.4e-31 140.6 91 72.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.5e-30 137.1 80 80.0
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 5.7e-30 135.2 78 80.8
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 5.6e-25 118.6 81 70.4
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 5.2e-23 112.1 94 57.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.7e-21 105.9 79 60.8
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.4e-20 104.0 77 61.0
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.6e-19 100.5 161 42.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-18 97.8 90 55.6
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 2.3e-18 96.7 85 54.1
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.0e-10 71.2 187 27.8
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.3e-09 66.2 171 28.7
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.6e-08 63.9 202 28.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.6e-08 63.9 178 28.7
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.1e-08 63.5 177 28.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.6e-08 62.8 181 29.8
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.6e-08 62.8 166 25.9
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 4.7e-08 62.4 204 26.0
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.7e-08 62.4 171 28.7
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 8.1e-08 61.6 170 27.6
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.3e-07 60.1 50 52.0
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.1e-07 59.7 210 26.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 5.2e-07 58.9 176 26.7
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 8.9e-07 58.2 170 26.5
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.2e-06 57.8 174 27.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 171 26.9
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.6e-06 56.6 169 29.6
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.6e-06 56.6 177 27.1
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.8e-06 55.5 170 27.1
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 7.5e-06 55.1 185 27.0


User provided reference genes

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