Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 5.0e-224 780.8 395 100.0
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.4e-154 549.3 449 67.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 3.0e-152 542.3 449 67.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.7e-97 359.0 461 48.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 5.4e-93 345.5 452 45.4
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 7.7e-92 341.7 454 48.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.0e-91 341.3 451 45.9
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.7e-91 340.5 451 47.2
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.7e-91 340.5 454 48.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.6e-91 338.6 454 48.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 8.6e-91 338.2 451 46.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.1e-90 337.8 448 46.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.9e-90 337.0 456 46.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.2e-89 334.3 447 47.2
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.6e-89 334.0 459 47.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.1e-89 333.6 459 46.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 6.1e-89 332.0 455 47.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.0e-87 327.0 480 44.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.7e-87 325.5 454 44.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.7e-86 323.9 437 46.0
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.2e-86 323.6 437 46.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.2e-86 323.6 480 44.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 6.3e-86 322.0 435 45.5
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 6.3e-86 322.0 435 45.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 8.3e-86 321.6 436 45.0
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.4e-85 320.1 465 46.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.6e-84 317.4 446 45.1
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.6e-84 317.4 466 45.5
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.3e-83 313.5 469 43.3
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 6.6e-83 312.0 484 43.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.5e-82 310.8 486 42.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.5e-82 310.8 434 43.5
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.9e-82 310.5 465 44.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 7.3e-82 308.5 434 43.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-81 307.4 434 43.1
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.1e-81 307.0 477 44.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.6e-81 306.2 470 42.1
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.8e-80 303.9 434 43.1
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.8e-80 303.9 506 40.9
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.8e-80 303.9 449 43.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.3e-80 303.5 468 43.4
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.1e-80 303.1 432 43.8
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 4.0e-80 302.8 459 43.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.2e-80 302.4 469 41.8
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 5.2e-80 302.4 436 43.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 2.0e-79 300.4 470 43.6
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.0e-79 300.4 514 41.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 2.6e-79 300.1 451 41.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.6e-79 300.1 466 42.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 5.8e-79 298.9 471 43.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 5.8e-79 298.9 417 44.6
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.7e-78 297.4 453 41.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.9e-78 295.8 461 42.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 6.4e-78 295.4 435 42.1
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 8.3e-78 295.0 466 42.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 5.4e-77 292.4 488 40.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.0e-77 292.0 448 41.5
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 7.0e-77 292.0 489 40.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-76 290.8 474 42.2
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.7e-76 290.0 471 42.3
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 5.0e-75 285.8 459 42.9
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.1e-74 284.6 452 41.4
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.5e-74 284.3 471 41.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.9e-74 283.9 459 42.3
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 5.6e-74 282.3 471 41.4
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.6e-73 280.8 464 41.6
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.1e-73 280.4 449 39.6
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-73 280.0 500 41.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-73 280.0 500 41.0
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.2e-72 275.8 463 38.7
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.2e-71 274.6 458 39.7
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.4e-71 272.7 459 39.4
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 5.8e-71 272.3 446 39.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.2e-70 270.4 494 39.7
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.4e-69 267.7 444 41.9
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.4e-69 267.7 447 39.4
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.9e-69 267.3 500 37.0
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 5.4e-69 265.8 439 40.5
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.2e-68 264.6 446 39.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-68 264.6 497 36.4
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.6e-68 264.2 431 40.1
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.5e-68 263.1 388 44.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.6e-68 262.7 495 36.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.7e-67 260.8 443 40.2
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.3e-67 260.4 412 41.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.9e-66 257.3 463 39.5
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 8.1e-65 251.9 429 40.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.1e-64 250.0 429 40.3
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.1e-64 250.0 437 39.1
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 5.2e-64 249.2 420 38.3
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-62 244.6 344 42.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.2e-62 243.8 435 39.5
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.7e-62 243.0 445 38.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.4e-61 241.1 301 48.5
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-60 237.7 383 39.4
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-60 237.7 383 39.4
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.0e-59 235.0 429 39.9
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.0e-59 235.0 384 41.1
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.3e-59 234.6 439 37.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.1e-58 231.5 425 39.8
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.9e-58 230.7 420 41.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.5e-58 230.3 298 45.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.6e-57 227.6 429 38.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.7e-57 226.1 419 39.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.3e-54 218.0 532 31.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.2e-53 213.4 446 36.1
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.2e-52 211.5 430 35.3
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.2e-52 211.5 430 36.3
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 7.8e-52 208.8 422 36.5
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.0e-51 208.4 396 36.6
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.1e-50 204.9 430 37.2
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.5e-50 203.8 436 35.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.7e-46 191.0 408 35.8
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.4e-46 188.7 322 38.5
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 4.6e-44 183.0 374 34.5
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.8e-40 171.0 437 31.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 5.3e-40 169.5 420 36.0
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.6e-39 165.6 271 38.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.8e-35 154.5 319 35.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.6e-33 147.9 442 28.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.1e-33 147.5 368 33.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.8e-33 146.4 450 30.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-29 135.2 217 45.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.6e-26 122.9 214 42.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 7.4e-26 122.5 127 48.0
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.6e-23 114.0 208 40.9
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 4.5e-23 113.2 90 53.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.3e-18 97.1 391 25.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.2e-17 94.4 94 50.0
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 8.2e-17 92.4 210 37.1
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 8.2e-17 92.4 153 43.8
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 3.1e-16 90.5 109 41.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 6.9e-16 89.4 108 40.7
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.6e-12 77.0 98 42.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.6e-12 77.0 199 31.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.0e-10 71.2 188 34.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.2e-09 67.8 168 31.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.8e-09 67.4 62 50.0
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 8.2e-09 65.9 112 32.1
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-08 65.1 123 44.7
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 5.3e-08 63.2 153 33.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 6.9e-08 62.8 47 57.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 9.1e-08 62.4 106 34.9
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-07 62.0 89 41.6
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 1.2e-07 62.0 110 34.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.5e-07 61.6 195 30.8
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.5e-07 60.1 96 40.6
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.9e-07 59.7 164 28.7
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 7.7e-07 59.3 148 31.1
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 2.9e-06 57.4 157 31.2
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.8e-06 57.0 99 35.4
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 3.8e-06 57.0 157 29.3
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 5.0e-06 56.6 96 38.5
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 5.0e-06 56.6 96 36.5
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 5.0e-06 56.6 117 38.5
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 6.5e-06 56.2 124 33.9
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 6.5e-06 56.2 107 37.4
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 6.5e-06 56.2 166 30.1
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 6.5e-06 56.2 170 29.4
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 6.5e-06 56.2 99 34.3
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 8.5e-06 55.8 177 29.9
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 8.5e-06 55.8 121 30.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 8.5e-06 55.8 102 34.3
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 8.5e-06 55.8 107 36.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 8.5e-06 55.8 101 33.7


User provided reference genes

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