Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 4.6e-52 207.6 104 100.0
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.0e-39 165.6 104 77.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 7.6e-39 163.7 104 76.9
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 2.9e-38 161.8 100 77.0
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.4e-37 159.5 104 76.0
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 1.9e-37 159.1 100 76.0
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 3.2e-37 158.3 104 75.0
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 4.2e-37 157.9 103 74.8
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 5.4e-37 157.5 104 75.0
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-37 157.5 104 74.0
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-37 157.5 104 74.0
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-37 157.5 104 74.0
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 1.6e-36 156.0 104 75.0
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.1e-36 155.6 104 74.0
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.7e-36 155.2 104 74.0
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 3.5e-36 154.8 104 74.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 4.6e-36 154.5 104 75.0
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 6.0e-36 154.1 103 74.8
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 7.9e-36 153.7 103 73.8
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.0e-35 153.3 103 72.8
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.3e-35 152.9 103 72.8
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.3e-35 152.9 103 72.8
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 5.1e-35 151.0 104 72.1
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 6.7e-35 150.6 99 74.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 4.3e-34 147.9 99 73.7
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 4.3e-34 147.9 102 69.6
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 9.6e-34 146.7 104 72.1
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 9.6e-34 146.7 104 72.1
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 9.6e-34 146.7 102 67.6
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 9.6e-34 146.7 97 74.2
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 9.6e-34 146.7 97 74.2
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 9.6e-34 146.7 97 74.2
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 1.3e-33 146.4 104 72.1
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.1e-33 145.6 99 70.7
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.1e-33 145.6 99 70.7
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.8e-33 145.2 97 73.2
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.7e-33 144.8 103 71.8
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 6.2e-33 144.1 99 73.7
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.4e-32 142.9 100 71.0
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.8e-32 142.5 96 70.8
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.8e-32 142.5 96 70.8
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 3.1e-32 141.7 99 71.7
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.1e-32 141.7 99 70.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 9.0e-32 140.2 99 70.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 68.7
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.4e-31 138.3 103 67.0
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 3.4e-31 138.3 100 69.0
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 5.8e-31 137.5 97 69.1
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.6e-31 137.1 92 70.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 1.7e-30 136.0 99 65.7
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 4.9e-30 134.4 104 64.4
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 4.9e-30 134.4 99 65.7
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 2.5e-29 132.1 99 65.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 3.2e-29 131.7 99 64.6
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 3.2e-29 131.7 99 64.6
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 3.2e-29 131.7 99 64.6
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 4.2e-29 131.3 99 67.7
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 4.2e-29 131.3 93 66.7
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 5.5e-29 131.0 93 66.7
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.5e-29 131.0 99 64.6
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 7.1e-29 130.6 93 66.7
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 7.1e-29 130.6 93 66.7
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 7.1e-29 130.6 93 66.7
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 7.1e-29 130.6 99 64.6
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 7.1e-29 130.6 99 64.6
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 9.3e-29 130.2 93 66.7
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 2.1e-28 129.0 93 65.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 3.5e-28 128.3 88 71.6
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 4.6e-28 127.9 93 64.5
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 6.0e-28 127.5 93 64.5
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.0e-27 126.7 93 64.5
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.3e-27 126.3 99 62.6
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 1.8e-27 125.9 99 61.6
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.0e-27 125.2 93 65.6
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 8.7e-27 123.6 87 67.8
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 1.1e-26 123.2 103 59.2
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 2.5e-26 122.1 99 62.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 5.7e-26 120.9 87 69.0
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.7e-26 120.9 87 69.0
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-25 119.4 88 65.9
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 1.1e-24 116.7 82 67.1
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.4e-24 116.3 104 55.8
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 5.3e-24 114.4 86 64.0
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 7.6e-23 110.5 87 59.8
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.0e-22 110.2 99 54.5
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 9.3e-21 103.6 77 67.5
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 9.3e-21 103.6 98 54.1
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.3e-19 99.8 71 64.8
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 2.3e-19 99.0 63 74.6
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 6.7e-19 97.4 75 62.7
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 8.7e-19 97.1 63 73.0
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 8.7e-19 97.1 63 73.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 2.5e-18 95.5 62 74.2
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 4.8e-17 91.3 77 58.4
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 6.3e-17 90.9 74 59.5
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.4e-16 89.7 60 73.3
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.8e-16 89.4 64 68.8
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.4e-16 89.0 63 66.7
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 7.7e-15 84.0 96 44.8
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 6.5e-14 80.9 68 55.9
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-13 80.1 61 62.3
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.9e-13 79.3 49 75.5
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 7.2e-13 77.4 53 67.9
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 7.4e-10 67.4 87 42.5
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 3.7e-09 65.1 39 74.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 3.7e-09 65.1 71 50.7
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.1e-08 62.0 87 42.5
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.5e-07 59.7 53 52.8
Sabra16G0250800 Salix brachista HOM05D007153 ORTHO05D009081 1.5e-07 59.7 44 63.6
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 1.0e-06 57.0 88 39.8
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 1.3e-06 56.6 64 43.8
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.3e-06 56.6 88 39.8
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 2.2e-06 55.8 88 39.8
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 2.2e-06 55.8 88 39.8
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 2.2e-06 55.8 88 39.8
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 2.2e-06 55.8 88 39.8
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 2.2e-06 55.8 56 48.2
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 2.2e-06 55.8 56 48.2
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 2.2e-06 55.8 56 48.2
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 2.2e-06 55.8 90 40.0
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 2.2e-06 55.8 90 40.0
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.2e-06 55.8 56 48.2
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 2.9e-06 55.5 56 46.4
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 89 37.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 88 39.8
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 3.8e-06 55.1 56 48.2
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 3.8e-06 55.1 87 36.8
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 5.0e-06 54.7 54 46.3
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.0e-06 54.7 87 37.9
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.0e-06 54.7 88 37.5
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 6.5e-06 54.3 88 38.6
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 6.5e-06 54.3 86 38.4
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 8.5e-06 53.9 94 35.1


User provided reference genes

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