Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 7.5e-141 503.8 251 100.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.4e-134 483.0 251 94.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 3.4e-133 478.4 251 94.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 6.6e-129 464.2 249 90.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 6.6e-129 464.2 249 90.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.5e-128 462.2 249 90.0
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.5e-128 460.3 249 89.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 9.5e-128 460.3 245 90.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.6e-127 459.5 249 88.0
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.1e-127 459.1 249 90.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.1e-127 459.1 249 89.2
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 3.6e-127 458.4 245 90.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 4.7e-127 458.0 249 89.6
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.1e-127 457.6 249 89.2
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 8.0e-127 457.2 249 88.4
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.0e-126 456.8 249 88.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.4e-126 456.4 249 88.8
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.8e-126 456.1 246 91.5
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.8e-126 456.1 246 91.5
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.8e-126 456.1 249 88.8
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.8e-126 456.1 249 88.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.8e-126 456.1 244 91.8
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.8e-126 456.1 244 91.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.3e-126 455.7 249 88.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 4.0e-126 454.9 249 88.0
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 5.2e-126 454.5 246 91.1
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 5.2e-126 454.5 244 91.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 6.8e-126 454.1 245 89.4
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 6.8e-126 454.1 249 88.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 6.8e-126 454.1 298 79.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.8e-126 454.1 249 87.6
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 6.8e-126 454.1 249 88.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 8.9e-126 453.8 249 88.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.2e-125 453.4 249 88.8
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.5e-125 453.0 249 87.6
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 249 88.0
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 4.4e-125 451.4 249 88.8
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 4.4e-125 451.4 249 88.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 4.4e-125 451.4 249 87.1
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 5.8e-125 451.1 244 88.5
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.8e-125 451.1 245 89.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 5.8e-125 451.1 249 87.1
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 9.8e-125 450.3 244 88.5
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 9.8e-125 450.3 249 86.7
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 9.8e-125 450.3 249 88.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.3e-124 449.9 249 88.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-124 449.9 257 85.6
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.7e-124 449.5 244 88.9
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.2e-124 449.1 246 90.2
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 86.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 6.4e-124 447.6 249 87.1
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.1e-123 446.8 249 85.5
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.4e-123 446.4 246 87.8
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.9e-123 446.0 249 85.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.4e-123 445.7 249 85.9
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 87.7
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 7.0e-123 444.1 250 85.6
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 7.0e-123 444.1 249 84.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 87.2
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.2e-122 443.4 249 86.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 85.9
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 3.5e-122 441.8 244 88.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.8e-122 440.7 254 84.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.3e-121 439.1 246 89.0
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 3.9e-121 438.3 267 82.0
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 6.6e-121 437.6 245 86.5
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.5e-120 436.4 249 83.1
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.5e-120 436.4 249 83.1
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.3e-120 435.3 249 85.1
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 5.6e-120 434.5 249 83.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 5.6e-120 434.5 229 90.4
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 5.6e-120 434.5 249 83.9
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.2e-119 433.3 245 85.7
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.6e-119 433.0 249 82.7
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 3.6e-119 431.8 248 84.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.2e-119 431.0 249 82.7
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 6.2e-119 431.0 249 82.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-118 430.3 249 82.7
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-118 430.3 249 82.7
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.8e-118 429.5 249 82.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-118 428.7 249 82.7
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.1e-118 428.7 249 82.7
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.0e-117 426.0 233 88.8
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.4e-117 424.9 249 82.7
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.3e-116 423.3 269 78.8
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.7e-116 422.9 245 84.9
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.9e-116 422.2 249 81.9
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.1e-115 420.2 233 85.8
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.4e-115 419.9 296 70.6
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.5e-112 409.1 249 80.7
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.3e-112 408.7 249 80.3
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.3e-110 402.5 249 79.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.3e-110 402.5 251 76.5
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.9e-108 394.8 254 79.5
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.1e-107 393.7 358 58.7
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.6e-103 379.8 243 76.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 8.1e-103 377.5 249 76.3
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.1e-102 377.1 212 87.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.4e-102 375.9 242 72.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 5.2e-102 374.8 221 80.1
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 3.4e-101 372.1 253 73.5
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.9e-99 366.3 249 74.7
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 6.6e-97 357.8 249 75.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.6e-95 353.2 236 74.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 4.9e-92 341.7 245 67.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.6e-90 335.1 206 80.6
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.7e-89 333.2 194 84.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 3.3e-88 328.9 180 87.8
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 7.6e-85 317.8 323 56.0
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.4e-83 313.5 187 83.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.5e-77 293.5 207 72.9
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.7e-74 282.7 245 55.1
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.7e-74 282.7 151 90.1
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 8.2e-71 271.2 183 71.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.8e-69 265.0 211 69.7
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 6.1e-66 255.0 249 51.0
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 7.9e-66 254.6 152 80.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.0e-60 237.7 198 61.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.4e-59 233.8 246 55.7
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.3e-52 210.7 125 80.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.0e-48 196.8 114 83.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.7e-47 193.7 99 92.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.1e-46 191.0 249 45.4
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 6.5e-44 181.8 95 90.5
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 6.1e-42 175.3 95 84.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 5.7e-40 168.7 158 62.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.2e-39 166.8 98 81.6
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.3e-39 165.2 253 35.6
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-36 157.9 98 74.5
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 7.7e-29 131.7 94 71.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.6e-19 99.0 66 69.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 4.7e-18 95.9 95 53.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.3e-15 87.8 137 43.8
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 8.3e-15 85.1 55 78.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.2e-13 81.3 44 79.5
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 7.8e-13 78.6 56 69.6
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 1.3e-07 61.2 55 61.8


User provided reference genes

Program Settings