Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 3.2e-64 248.4 143 100.0
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 3.5e-42 175.3 143 74.1
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 1.3e-28 130.2 146 54.8
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.7e-28 129.8 137 58.4
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 1.2e-26 123.6 141 56.7
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 4.6e-26 121.7 155 57.4
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 1.0e-25 120.6 151 55.6
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 1.7e-25 119.8 139 56.8
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 1.7e-25 119.8 141 57.4
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 2.5e-24 115.9 140 53.6
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 4.3e-24 115.2 142 56.3
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.2e-23 113.6 147 51.7
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 1.1e-22 110.5 156 51.3
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.8e-22 109.8 147 53.1
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 5.2e-22 108.2 149 53.7
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.5e-21 106.7 160 46.9
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 3.4e-21 105.5 143 54.5
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 3.4e-21 105.5 141 50.4
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.7e-20 103.2 149 49.7
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 1.7e-20 103.2 151 47.7
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 3.7e-20 102.1 149 49.7
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.9e-20 101.7 145 48.3
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.9e-20 101.7 145 48.3
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 6.4e-20 101.3 155 46.5
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 6.4e-20 101.3 155 46.5
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 1.4e-19 100.1 155 45.8
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 1.9e-19 99.8 139 48.9
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 2.4e-19 99.4 139 48.2
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 5.4e-19 98.2 145 46.2
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 1.2e-18 97.1 156 49.4
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.6e-18 96.7 143 45.5
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 2.1e-18 96.3 144 49.3
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 4.6e-18 95.1 161 46.6
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.0e-18 94.7 146 49.3
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 1.0e-17 94.0 153 47.7
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.3e-17 93.6 139 48.2
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 2.3e-17 92.8 127 50.4
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 3.0e-17 92.4 150 46.0
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 3.9e-17 92.0 150 44.7
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 6.6e-17 91.3 142 47.2
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 6.6e-17 91.3 142 47.2
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 6.6e-17 91.3 154 44.2
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 1.5e-16 90.1 137 44.5
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 1.5e-16 90.1 150 46.7
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.9e-16 89.7 137 44.5
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 5.6e-16 88.2 135 48.9
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 1.2e-15 87.0 153 45.8
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 1.2e-15 87.0 154 46.1
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 2.1e-15 86.3 152 45.4
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 2.8e-15 85.9 142 42.3
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 2.8e-15 85.9 151 45.0
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 3.6e-15 85.5 149 45.0
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 3.6e-15 85.5 155 42.6
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 4.7e-15 85.1 134 44.8
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 4.7e-15 85.1 144 44.4
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 1.8e-14 83.2 141 43.3
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 1.8e-14 83.2 160 43.1
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 3.1e-14 82.4 148 43.2
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 5.2e-14 81.6 159 42.8
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 1.2e-13 80.5 133 44.4
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.2e-13 80.5 141 42.6
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 1.2e-13 80.5 137 46.0
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 2.0e-13 79.7 148 42.6
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 2.9e-12 75.9 159 38.4
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 3.7e-12 75.5 136 41.9
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.1e-11 73.9 143 43.4
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 3.2e-11 72.4 185 36.2
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 9.2e-11 70.9 155 40.6
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 2.1e-10 69.7 144 40.3
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 2.7e-10 69.3 63 65.1
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 2.7e-10 69.3 63 65.1
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 3.5e-10 68.9 145 40.0
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 6.0e-10 68.2 70 60.0
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 7.8e-10 67.8 139 36.7
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 1.0e-09 67.4 128 39.8
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.0e-09 67.4 123 40.7
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 1.3e-09 67.0 124 39.5
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 1.3e-09 67.0 137 38.7
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.3e-09 66.2 142 40.8
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 1.1e-08 63.9 135 39.3
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 1.1e-08 63.9 140 37.9
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 3.3e-08 62.4 136 39.7
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 1.2e-07 60.5 139 34.5
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.1e-07 59.7 146 40.4
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 8.1e-07 57.8 163 33.1


User provided reference genes

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