Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G063550 Manihot esculenta HOM05D000594 ORTHO05D010385 9.0e-69 263.5 133 100.0
Manes.03G137802 Manihot esculenta HOM05D000594 ORTHO05D010385 1.5e-39 166.4 115 77.4
Manes.03G137700 Manihot esculenta HOM05D000594 ORTHO05D010385 3.3e-39 165.2 115 76.5
Gohir.D13G138900 Gossypium hirsutum HOM05D000594 ORTHO05D010385 1.9e-26 122.9 113 52.2
Gorai.013G155400 Gossypium raimondii HOM05D000594 ORTHO05D010385 1.9e-26 122.9 113 52.2
COL.COLO4_09783 Corchorus olitorius HOM05D000594 ORTHO05D010385 3.2e-26 122.1 113 54.0
Prupe.4G232900 Prunus persica HOM05D000594 ORTHO05D010385 4.2e-26 121.7 127 55.1
Thecc.07G022700 Theobroma cacao HOM05D000594 ORTHO05D010385 1.6e-25 119.8 120 51.7
Gohir.A13G134500 Gossypium hirsutum HOM05D000594 ORTHO05D010385 2.1e-25 119.4 113 51.3
QL08p005527 Quercus lobata HOM05D000594 ORTHO05D010385 2.7e-25 119.0 112 53.6
Ciclev10009089m.g Citrus clementina HOM05D000594 ORTHO05D010385 1.0e-24 117.1 116 56.9
Duzib213G0747 Durio zibethinus HOM05D000594 ORTHO05D010385 1.8e-24 116.3 120 50.8
Cfa020232 Carpinus fangiana HOM05D000594 ORTHO05D010385 1.2e-23 113.6 111 55.9
Haze_09785 Corylus avellana HOM05D000594 ORTHO05D010385 1.2e-23 113.6 111 55.9
CiPaw.12G135800 Carya illinoinensis HOM05D000594 ORTHO05D010385 1.5e-23 113.2 185 40.5
Prupe.4G232700 Prunus persica HOM05D000594 ORTHO05D010385 2.2e-22 109.4 114 54.4
CSS0018493 Camellia sinensis var. sinensis HOM05D000594 ORTHO05D010385 2.8e-22 109.0 116 52.6
Atru.chr2.769 Acer truncatum HOM05D000594 ORTHO05D010385 8.3e-22 107.5 117 50.4
CANSAT11G1023 Cannabis sativa HOM05D000594 ORTHO05D010385 4.1e-21 105.1 114 50.9
vmacro09670 Vaccinium macrocarpon HOM05D000594 ORTHO05D010385 9.1e-21 104.0 120 51.7
Dinv10310 Davidia involucrata HOM05D000594 ORTHO05D010385 4.5e-20 101.7 117 52.1
RcHm_v2.0_Chr5g0042611 Rosa chinensis HOM05D000594 ORTHO05D010385 5.9e-20 101.3 115 52.2
Hma1.2p1_0036F.1_g022750 Hydrangea macrophylla HOM05D000594 ORTHO05D010385 7.7e-20 100.9 120 54.2
Rhsim04G0014900 Rhododendron simsii HOM05D000594 ORTHO05D010385 1.3e-19 100.1 115 52.2
TAR627G1035 Trochodendron aralioides HOM05D000594 ORTHO05D010385 1.3e-19 100.1 110 49.1
FAN25G0897 Fragaria x ananassa HOM05D000594 ORTHO05D010385 2.1e-17 92.8 116 49.1
FAN11G2133 Fragaria x ananassa HOM05D000594 ORTHO05D010385 2.8e-17 92.4 116 48.3
FAN25G1496 Fragaria x ananassa HOM05D000594 ORTHO05D010385 2.8e-17 92.4 113 49.6
Migut.M01678 Erythranthe guttata HOM05D000594 ORTHO05D010385 1.0e-16 90.5 113 45.1
Solyc12g014615.1 Solanum lycopersicum HOM05D000594 ORTHO05D010385 1.8e-16 89.7 108 48.1
Sopen12g007520 Solanum pennellii HOM05D000594 ORTHO05D010385 6.8e-16 87.8 108 47.2
Cpa.g.sc12.195 Carica papaya HOM05D000594 ORTHO05D010385 1.5e-15 86.7 119 45.4
PGSC0003DMG400029814 Solanum tuberosum HOM05D000594 ORTHO05D010385 5.7e-15 84.7 108 49.1
Medtr5g094440 Medicago truncatula HOM05D000594 ORTHO05D010385 1.7e-14 83.2 123 39.0
Phvul.008G275400 Phaseolus vulgaris HOM05D000594 ORTHO05D010385 2.8e-14 82.4 119 39.5
Lj1A884G87 Lonicera japonica HOM05D000594 ORTHO05D010385 6.3e-14 81.3 114 42.1
VMungo0647G2235 Vigna mungo HOM05D000594 ORTHO05D010385 1.1e-13 80.5 120 38.3
Aqoxy4G02211 Aquilegia oxysepala HOM05D000594 ORTHO05D010385 2.4e-13 79.3 111 38.7
Glyma.14G016100 Glycine max HOM05D000594 ORTHO05D010385 4.1e-13 78.6 119 35.3
PGR083G2861 Punica granatum HOM05D000594 ORTHO05D010385 9.2e-13 77.4 117 43.6
AUR62017057 Chenopodium quinoa HOM05D000594 ORTHO05D010385 1.6e-12 76.6 107 45.8
LjContig00272g0006186 Lotus japonicus HOM05D000594 ORTHO05D010385 5.9e-12 74.7 120 36.7
LjContig00272g0012806 Lotus japonicus HOM05D000594 ORTHO05D010385 1.0e-11 73.9 120 35.0
Ah.06g181180 Amaranthus hybridus HOM05D000594 ORTHO05D010385 5.0e-11 71.6 123 37.4
AUR62040661 Chenopodium quinoa HOM05D000594 ORTHO05D010385 5.0e-11 71.6 115 43.5
PSO675G3875 Papaver somniferum HOM05D000594 ORTHO05D010385 6.6e-11 71.2 115 38.3
arahy.Tifrunner.gnm1.ann1.H7RCEW Arachis hypogaea HOM05D000594 ORTHO05D010385 1.9e-10 69.7 120 35.0
TPR.G31718 Trifolium pratense HOM05D000594 ORTHO05D010385 3.3e-10 68.9 113 38.9
Lalb_Chr10g0107311 Lupinus albus HOM05D000594 ORTHO05D010385 4.3e-10 68.6 110 36.4
arahy.Tifrunner.gnm1.ann1.654T2H Arachis hypogaea HOM05D000594 ORTHO05D010385 9.5e-10 67.4 120 34.2
Ca_06371_v3 Cicer arietinum L. HOM05D000594 ORTHO05D010385 9.5e-10 67.4 124 35.5
Lalb_Chr04g0247991 Lupinus albus HOM05D000594 ORTHO05D010385 9.5e-10 67.4 120 35.0
PSO541G1013 Papaver somniferum HOM05D000594 ORTHO05D010385 4.7e-09 65.1 116 37.1
Lsat_1_v5_gn_0_15181 Lactuca sativa HOM05D000594 ORTHO05D010385 1.0e-08 63.9 112 37.5
Sed0007436 Sechium edule HOM05D000594 ORTHO05D003009 1.8e-08 63.2 111 35.1
CAN.G392.4 Capsicum annuum HOM05D000594 ORTHO05D002521 3.1e-08 62.4 116 33.6
Lalb_Chr19g0134681 Lupinus albus HOM05D000594 ORTHO05D003009 6.8e-08 61.2 120 34.2
Nitab4.5_0000193g0090 Nicotiana tabacum HOM05D000594 ORTHO05D002521 8.9e-08 60.8 109 34.9
CAN.G162.141 Capsicum annuum HOM05D000594 ORTHO05D003009 1.2e-07 60.5 112 34.8
TPR.G3475 Trifolium pratense HOM05D000594 ORTHO05D010385 1.2e-07 60.5 114 35.1
Peaxi162Scf00154g00124 Petunia axillaris HOM05D000594 ORTHO05D002521 1.5e-07 60.1 111 33.3
CiPaw.12G125500 Carya illinoinensis HOM05D000594 ORTHO05D003009 2.6e-07 59.3 114 33.3
FvH4_3g21630 Fragaria vesca HOM05D000594 ORTHO05D003009 2.6e-07 59.3 114 34.2
FAN11G3372 Fragaria x ananassa HOM05D000594 ORTHO05D003009 2.6e-07 59.3 114 34.2
FAN25G1561 Fragaria x ananassa HOM05D000594 ORTHO05D003009 2.6e-07 59.3 114 34.2
Medtr4g081420 Medicago truncatula HOM05D000594 ORTHO05D003009 2.6e-07 59.3 119 35.3
Ca_18840_v3 Cicer arietinum L. HOM05D000594 ORTHO05D003009 3.4e-07 58.9 114 33.3
Cc05_g13120 Coffea canephora HOM05D000594 ORTHO05D003009 3.4e-07 58.9 114 33.3
Eucgr.F03752 Eucalyptus grandis HOM05D000594 ORTHO05D002521 3.4e-07 58.9 109 34.9
Glyma.06G265800 Glycine max HOM05D000594 ORTHO05D003009 3.4e-07 58.9 114 34.2
Nitab4.5_0000552g0030 Nicotiana tabacum HOM05D000594 ORTHO05D003009 3.4e-07 58.9 112 34.8
TPR.G34065 Trifolium pratense HOM05D000594 ORTHO05D003009 3.4e-07 58.9 114 34.2
TAR629G0326 Trochodendron aralioides HOM05D000594 ORTHO05D003009 3.4e-07 58.9 114 33.3
Gohir.A01G073400 Gossypium hirsutum HOM05D000594 ORTHO05D003009 4.4e-07 58.5 114 34.2
Gohir.D01G060000 Gossypium hirsutum HOM05D000594 ORTHO05D003009 4.4e-07 58.5 114 34.2
Gorai.002G081400 Gossypium raimondii HOM05D000594 ORTHO05D003009 4.4e-07 58.5 114 34.2
Psat2g009280 Pisum sativum HOM05D000594 ORTHO05D010385 4.4e-07 58.5 113 32.7
Cpa.g.sc97.89 Carica papaya HOM05D000594 ORTHO05D003009 5.8e-07 58.2 114 33.3
COL.COLO4_09551 Corchorus olitorius HOM05D000594 ORTHO05D003009 5.8e-07 58.2 114 32.5
FAN16G2939 Fragaria x ananassa HOM05D000594 ORTHO05D003009 5.8e-07 58.2 114 34.2
RcHm_v2.0_Chr5g0037081 Rosa chinensis HOM05D000594 ORTHO05D003009 5.8e-07 58.2 114 34.2
CiPaw.11G182400 Carya illinoinensis HOM05D000594 ORTHO05D003009 7.5e-07 57.8 114 33.3
CsaV3_3G022770 Cucumis sativus L. HOM05D000594 ORTHO05D003009 7.5e-07 57.8 113 31.0
Duzib213G0363 Durio zibethinus HOM05D000594 ORTHO05D003009 7.5e-07 57.8 114 32.5
Psat7g161080 Pisum sativum HOM05D000594 ORTHO05D003009 7.5e-07 57.8 114 33.3
PGSC0003DMG400021725 Solanum tuberosum HOM05D000594 ORTHO05D003009 7.5e-07 57.8 117 34.2
Potri.011G131300 Populus trichocarpa HOM05D000594 ORTHO05D003009 9.8e-07 57.4 114 33.3
Rhsim06G0187900 Rhododendron simsii HOM05D000594 ORTHO05D003009 9.8e-07 57.4 114 32.5
Aqoxy1G03826 Aquilegia oxysepala HOM05D000594 ORTHO05D003009 1.3e-06 57.0 119 35.3
FAN21G2737 Fragaria x ananassa HOM05D000594 ORTHO05D003009 1.3e-06 57.0 114 33.3
Glyma.12G136900 Glycine max HOM05D000594 ORTHO05D003009 1.3e-06 57.0 112 33.0
HanXRQChr16g0516511 Helianthus annuus HOM05D000594 ORTHO05D003009 1.3e-06 57.0 116 31.9
Thecc.07G055900 Theobroma cacao HOM05D000594 ORTHO05D003009 1.3e-06 57.0 114 33.3
Actinidia28658 Actinidia chinensis HOM05D000594 ORTHO05D003009 1.7e-06 56.6 114 32.5
CSS0040105 Camellia sinensis var. sinensis HOM05D000594 ORTHO05D003009 1.7e-06 56.6 112 33.0
CSS0045235 Camellia sinensis var. sinensis HOM05D000594 ORTHO05D003009 1.7e-06 56.6 112 33.0
Nitab4.5_0000494g0030 Nicotiana tabacum HOM05D000594 ORTHO05D002521 1.7e-06 56.6 115 33.0
Rhsim13G0162500 Rhododendron simsii HOM05D000594 ORTHO05D003009 1.7e-06 56.6 119 31.9
SEGI_28925 Sequoiadendron giganteum HOM05D000594 ORTHO05D002521 1.7e-06 56.6 110 32.7
Solyc07g063970.3 Solanum lycopersicum HOM05D000594 ORTHO05D003009 1.7e-06 56.6 112 33.0
Sopen07g032110 Solanum pennellii HOM05D000594 ORTHO05D003009 1.7e-06 56.6 112 33.0
PGSC0003DMG400019231 Solanum tuberosum HOM05D000594 ORTHO05D003009 1.7e-06 56.6 112 33.0
HPP92_012334 Vanilla planifolia HOM05D000594 ORTHO05D003009 1.7e-06 56.6 114 33.3
Cfa020457 Carpinus fangiana HOM05D000594 ORTHO05D003009 2.2e-06 56.2 113 33.6
Ciclev10008310m.g Citrus clementina HOM05D000594 ORTHO05D003009 2.2e-06 56.2 114 32.5
Lj1A862T74 Lonicera japonica HOM05D000594 ORTHO05D003009 2.2e-06 56.2 116 34.5
Nn1g03734 Nelumbo nucifera HOM05D000594 ORTHO05D003009 2.2e-06 56.2 114 34.2
Oeu007647.1 Olea europaea HOM05D000594 ORTHO05D003009 2.2e-06 56.2 106 34.9
Phvul.011G142000 Phaseolus vulgaris HOM05D000594 ORTHO05D003009 2.2e-06 56.2 114 32.5
Sed0001219 Sechium edule HOM05D000594 ORTHO05D003009 2.2e-06 56.2 113 30.1
Sed0017155 Sechium edule HOM05D000594 ORTHO05D003009 2.2e-06 56.2 115 33.0
TWI39G0205 Tripterygium wilfordii HOM05D000594 ORTHO05D003009 2.2e-06 56.2 114 32.5
TWI56G0790 Tripterygium wilfordii HOM05D000594 ORTHO05D002521 2.2e-06 56.2 112 33.9
VMungo1127G1280 Vigna mungo HOM05D000594 ORTHO05D003009 2.2e-06 56.2 114 32.5
GSVIVG01004470001 Vitis vinifera HOM05D000594 ORTHO05D003009 2.2e-06 56.2 116 33.6
Glyma.04G252600 Glycine max HOM05D000594 ORTHO05D002521 2.9e-06 55.8 109 33.0
MD03G1214000 Malus domestica HOM05D000594 ORTHO05D003009 2.9e-06 55.8 114 32.5
Peaxi162Scf00082g00107 Petunia axillaris HOM05D000594 ORTHO05D003009 2.9e-06 55.8 120 33.3
Peaxi162Scf01086g00028 Petunia axillaris HOM05D000594 ORTHO05D003009 2.9e-06 55.8 112 33.0
Prupe.4G200600 Prunus persica HOM05D000594 ORTHO05D003009 2.9e-06 55.8 114 32.5
MSTRG.15172 Avicennia marina HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 34.2
CAN.G424.99 Capsicum annuum HOM05D000594 ORTHO05D003009 3.7e-06 55.5 117 32.5
CiPaw.06G026400 Carya illinoinensis HOM05D000594 ORTHO05D002521 3.7e-06 55.5 115 33.0
ClCG05G014890 Citrullus lanatus HOM05D000594 ORTHO05D003009 3.7e-06 55.5 113 28.3
Cc00_g13620 Coffea canephora HOM05D000594 ORTHO05D003009 3.7e-06 55.5 112 32.1
Dinv03949 Davidia involucrata HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 31.6
Migut.M01820 Erythranthe guttata HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 32.5
Hma1.2p1_1054F.1_g252520 Hydrangea macrophylla HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 33.3
Hma1.2p1_3035F.1_g331936 Hydrangea macrophylla HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 33.3
Lsat_1_v5_gn_4_57900 Lactuca sativa HOM05D000594 ORTHO05D003009 3.7e-06 55.5 116 31.0
MBI16_g46146_MAGBIO Magnolia biondii HOM05D000594 ORTHO05D002521 3.7e-06 55.5 108 29.6
MD11G1229000 Malus domestica HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 31.6
Manes.03G121500 Manihot esculenta HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 31.6
Phvul.009G121700 Phaseolus vulgaris HOM05D000594 ORTHO05D002521 3.7e-06 55.5 107 33.6
Potri.001G415600 Populus trichocarpa HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 32.5
Solyc02g079920.3 Solanum lycopersicum HOM05D000594 ORTHO05D003009 3.7e-06 55.5 117 33.3
Sopen02g024670 Solanum pennellii HOM05D000594 ORTHO05D003009 3.7e-06 55.5 117 33.3
THA.LOC104817077 Tarenaya hassleriana HOM05D000594 ORTHO05D002521 3.7e-06 55.5 123 33.3
HPP92_012378 Vanilla planifolia HOM05D000594 ORTHO05D003009 3.7e-06 55.5 114 32.5
ATR0109G015 Amborella trichopoda HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 31.6
arahy.Tifrunner.gnm1.ann1.5FCQ1J Arachis hypogaea HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 31.6
arahy.Tifrunner.gnm1.ann1.B4LZ3P Arachis hypogaea HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 31.6
ClCG10G006310 Citrullus lanatus HOM05D000594 ORTHO05D003009 4.9e-06 55.1 115 32.2
Ciclev10001224m.g Citrus clementina HOM05D000594 ORTHO05D002521 4.9e-06 55.1 111 32.4
Haze_09587 Corylus avellana HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 32.5
Manes.15G077900 Manihot esculenta HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 32.5
Sabra11G0118400 Salix brachista HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 32.5
Sabra16G0282200 Salix brachista HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 32.5
Sc03g0009190 Simmondsia chinensis HOM05D000594 ORTHO05D003009 4.9e-06 55.1 119 35.3
SGA_v2.0_scaffold70G23538 Striga asiatica HOM05D000594 ORTHO05D003009 4.9e-06 55.1 114 33.3
vmacro03738 Vaccinium macrocarpon HOM05D000594 ORTHO05D003009 4.9e-06 55.1 117 32.5
MELO3C018138.2 Cucumis melo HOM05D000594 ORTHO05D003009 6.4e-06 54.7 113 29.2
DCAR_008681 Daucus carota HOM05D000594 ORTHO05D003009 6.4e-06 54.7 117 35.0
Eucgr.F03418 Eucalyptus grandis HOM05D000594 ORTHO05D003009 6.4e-06 54.7 119 31.9
Lsat_1_v5_gn_9_91601 Lactuca sativa HOM05D000594 ORTHO05D010385 6.4e-06 54.7 112 33.0
Lsat_1_v5_gn_9_95041 Lactuca sativa HOM05D000594 ORTHO05D003009 6.4e-06 54.7 120 31.7
Lj3g0006158 Lotus japonicus HOM05D000594 ORTHO05D003009 6.4e-06 54.7 116 33.6
PSO210G0474 Papaver somniferum HOM05D000594 ORTHO05D003009 6.4e-06 54.7 120 35.0
PSO832G1659 Papaver somniferum HOM05D000594 ORTHO05D003009 6.4e-06 54.7 120 35.0
SGA_v2.0_scaffold114G32012 Striga asiatica HOM05D000594 ORTHO05D003009 6.4e-06 54.7 112 33.9
vmacro11777 Vaccinium macrocarpon HOM05D000594 ORTHO05D003009 6.4e-06 54.7 114 30.7
HPP92_014099 Vanilla planifolia HOM05D000594 ORTHO05D003009 6.4e-06 54.7 119 30.3
Atru.chr2.3145 Acer truncatum HOM05D000594 ORTHO05D003009 8.3e-06 54.3 114 31.6
ECA240G2469 Erigeron canadensis HOM05D000081 ORTHO05D000036 8.3e-06 54.3 115 31.3
Lj3g0021031 Lotus japonicus HOM05D000594 ORTHO05D003009 8.3e-06 54.3 115 33.0
Lalb_Chr08g0241601 Lupinus albus HOM05D000594 ORTHO05D002521 8.3e-06 54.3 110 32.7
Lalb_Chr22g0357151 Lupinus albus HOM05D000594 ORTHO05D003009 8.3e-06 54.3 114 32.5
MBI09_g12174_MAGBIO Magnolia biondii HOM05D000594 ORTHO05D002521 8.3e-06 54.3 106 32.1
QL08p014022 Quercus lobata HOM05D000594 ORTHO05D003009 8.3e-06 54.3 114 32.5
Thecc.08G119600 Theobroma cacao HOM05D000594 ORTHO05D002521 8.3e-06 54.3 113 31.9
TWI38G0631 Tripterygium wilfordii HOM05D000594 ORTHO05D003009 8.3e-06 54.3 114 32.5


User provided reference genes

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