Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.5e-178 629.4 327 100.0
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.2e-153 545.8 327 85.9
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 7.2e-128 461.1 328 72.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.2e-127 460.3 328 73.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.3e-118 429.5 334 67.1
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.0e-117 426.4 333 67.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.8e-117 424.9 334 67.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 7.5e-117 424.5 334 66.2
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.4e-115 418.3 328 64.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.4e-115 418.3 330 65.8
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.2e-114 417.2 334 65.6
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-111 407.1 333 64.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.6e-111 406.8 331 63.4
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 4.0e-110 402.1 334 63.2
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.2e-109 400.6 327 63.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 3.4e-109 399.1 329 64.1
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.4e-109 398.7 329 64.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.4e-107 393.7 328 63.7
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.2e-107 392.5 333 61.9
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.1e-106 389.8 334 61.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 6.0e-106 388.3 333 62.5
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.3e-105 386.3 333 61.9
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 3.9e-105 385.6 333 60.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.9e-105 385.6 330 62.7
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 5.1e-105 385.2 330 61.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 8.6e-105 384.4 334 60.8
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-104 384.0 340 60.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-104 382.9 333 61.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.3e-104 382.1 333 61.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.3e-104 381.3 332 61.4
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-103 380.2 334 59.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.8e-103 379.4 329 61.7
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.8e-102 376.7 334 61.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.8e-102 376.7 334 60.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.8e-102 376.7 333 58.9
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.3e-102 376.3 335 60.9
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.1e-102 375.9 334 59.3
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 4.0e-102 375.6 339 60.2
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.2e-102 375.2 340 60.3
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.0e-101 373.2 330 61.2
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 4.4e-101 372.1 335 60.0
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 9.9e-101 370.9 335 59.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.3e-100 370.5 335 59.4
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.7e-100 369.0 334 60.2
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.9e-100 368.6 331 58.9
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.4e-100 368.2 333 59.2
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.4e-100 368.2 335 58.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.1e-99 367.5 334 59.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.2e-99 365.9 330 62.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 7.1e-99 364.8 332 58.1
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 6.0e-98 361.7 383 53.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.0e-97 360.9 333 58.9
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.1e-97 358.6 278 65.8
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.9e-96 356.7 327 59.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.3e-96 355.5 334 58.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 5.6e-96 355.1 339 60.5
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 5.6e-96 355.1 340 57.4
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 9.6e-96 354.4 342 56.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 6.2e-95 351.7 336 58.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.4e-94 350.5 280 64.3
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.4e-94 350.5 323 58.2
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.8e-94 348.2 340 54.1
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 6.8e-94 348.2 363 57.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 8.9e-94 347.8 338 56.5
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 5.8e-93 345.1 368 53.5
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-92 344.0 338 59.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.3e-92 344.0 317 56.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.9e-92 342.8 333 54.4
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.9e-92 342.8 278 62.2
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.9e-92 342.8 330 54.2
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.8e-92 342.4 333 54.4
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 8.4e-92 341.3 329 56.5
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 8.4e-92 341.3 331 55.9
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.9e-91 340.1 334 54.8
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.4e-91 339.7 333 54.4
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.6e-90 335.5 329 53.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.7e-89 333.6 343 52.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.0e-89 332.8 277 59.9
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 8.7e-89 331.3 332 54.5
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.1e-88 330.9 336 52.4
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-88 330.5 334 54.5
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.5e-88 330.5 284 59.9
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.9e-88 330.1 334 53.6
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.3e-88 329.3 330 54.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.3e-88 328.9 338 53.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 7.3e-88 328.2 331 54.1
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 7.3e-88 328.2 331 54.1
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 7.3e-88 328.2 331 54.1
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 9.6e-88 327.8 333 54.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 2.8e-87 326.2 328 54.6
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 8.1e-87 324.7 328 54.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.8e-86 323.6 337 53.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 7.6e-85 318.2 336 53.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 9.9e-85 317.8 246 68.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 9.9e-85 317.8 331 53.2
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.9e-84 316.2 332 53.0
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.9e-84 316.2 332 53.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.8e-84 315.8 376 49.7
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 8.4e-84 314.7 337 52.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.1e-83 314.3 338 52.4
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.4e-83 313.9 342 52.9
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 4.2e-83 312.4 331 52.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.4e-83 312.0 325 54.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.1e-83 311.6 332 53.0
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.6e-82 310.5 330 52.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.1e-82 310.1 328 52.4
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.5e-82 309.3 339 51.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.6e-82 308.9 336 51.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 6.0e-82 308.5 320 54.1
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 7.8e-82 308.1 333 51.4
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.3e-81 307.4 331 52.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.0e-81 306.2 221 70.1
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.9e-81 305.8 331 50.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.9e-81 305.8 350 50.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.1e-81 305.4 339 51.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-80 304.3 339 51.0
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.3e-79 300.8 320 53.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.1e-79 300.1 327 53.5
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.8e-79 298.9 324 49.7
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-78 297.7 325 52.0
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.0e-78 295.8 338 51.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 5.3e-78 295.4 308 54.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.4e-77 292.7 339 50.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-76 290.4 339 49.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 4.2e-75 285.8 336 50.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 4.6e-74 282.3 367 47.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.9e-73 279.3 246 61.4
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.1e-73 278.9 281 54.1
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 6.7e-73 278.5 332 49.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-71 274.2 241 58.5
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.5e-69 265.8 334 48.5
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 7.6e-69 265.0 297 51.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.8e-68 262.7 323 49.5
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.6e-66 255.8 334 48.8
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.6e-66 255.8 317 48.6
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.3e-64 249.6 304 50.0
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 7.4e-64 248.4 233 57.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.3e-57 226.9 255 49.8
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.6e-55 220.7 165 67.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-54 217.6 182 63.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-54 217.6 164 66.5
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.8e-52 209.5 234 48.7
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.0e-52 209.1 203 58.6
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 9.4e-51 204.9 216 54.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 9.4e-51 204.9 302 42.1
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.7e-50 203.4 306 42.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.9e-50 201.8 203 56.2
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-49 201.1 204 57.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.8e-49 198.4 183 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.4e-46 190.3 233 45.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.7e-42 176.8 148 59.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.2e-39 167.2 328 38.1
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.4e-38 164.5 173 57.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-38 164.5 128 64.1
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.3e-36 157.9 136 58.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-35 152.9 134 61.2
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.1e-32 144.8 210 43.8
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.2e-31 138.7 142 52.1
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.1e-30 136.3 122 55.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.7e-28 131.0 199 44.7
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.9e-27 127.5 140 48.6
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.5e-24 117.9 98 60.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-24 117.1 104 55.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.9e-19 100.9 219 32.4
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.1e-14 83.2 90 47.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.7e-13 80.5 63 63.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 7.7e-13 79.0 74 56.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.7e-12 77.8 62 59.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 2.3e-12 77.4 257 29.6
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-12 77.0 152 34.9
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-07 61.6 48 64.6


User provided reference genes

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