Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 4.1e-113 411.4 203 100.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-94 349.0 202 82.2
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.6e-93 346.3 201 82.6
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 7.5e-91 337.4 205 79.5
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.4e-89 333.2 202 77.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 5.4e-89 331.3 204 75.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.2e-88 330.1 203 75.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.7e-88 328.9 202 78.7
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 7.8e-88 327.4 205 75.6
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.7e-87 326.2 205 73.2
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.7e-87 326.2 254 65.4
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.3e-87 325.9 203 76.8
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.3e-87 325.9 202 75.2
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.9e-87 325.5 203 73.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.0e-87 324.7 203 74.4
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 6.6e-87 324.3 203 77.3
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.1e-86 323.6 203 74.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.5e-86 323.2 202 76.2
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.9e-86 322.8 202 73.3
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.3e-86 321.6 202 77.2
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 5.6e-86 321.2 203 73.4
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 5.6e-86 321.2 205 74.1
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 7.3e-86 320.9 206 73.3
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 9.5e-86 320.5 202 76.7
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.6e-85 319.7 203 73.4
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.1e-85 319.3 203 75.4
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.1e-85 319.3 202 75.2
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.8e-85 318.9 226 68.6
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.6e-85 318.5 202 76.2
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.6e-85 318.5 203 73.4
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 8.0e-85 317.4 205 72.2
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.0e-84 317.0 206 73.8
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.4e-84 316.6 203 73.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-84 316.6 203 72.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.3e-84 315.8 206 72.8
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.1e-84 315.5 202 75.7
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.1e-84 315.5 203 75.4
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 4.0e-84 315.1 203 73.9
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 5.2e-84 314.7 204 73.5
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 73.7
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 73.7
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.5e-83 313.2 203 74.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.5e-83 313.2 193 78.8
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.5e-83 313.2 203 73.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-83 313.2 203 73.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 72.7
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 4.4e-83 311.6 203 73.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 7.5e-83 310.8 205 72.7
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-82 309.7 203 73.4
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.7e-82 309.7 204 72.5
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 72.4
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.2e-82 309.3 202 70.8
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.2e-82 309.3 205 70.7
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.9e-82 308.9 203 73.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.9e-82 308.9 209 72.7
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.9e-82 308.9 203 72.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.9e-82 308.9 204 73.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.7e-82 308.5 204 73.5
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 3.7e-82 308.5 204 73.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 73.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.3e-82 307.4 205 71.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.9e-81 306.2 204 71.6
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 2.4e-81 305.8 203 71.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 2.4e-81 305.8 203 71.9
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 71.9
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 73.4
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 72.9
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 72.9
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 72.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 72.4
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 71.1
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.1e-81 305.1 203 72.9
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 4.1e-81 305.1 202 72.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 9.2e-81 303.9 203 70.9
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 72.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 72.9
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.0e-80 302.8 202 69.8
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 2.0e-80 302.8 204 70.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 205 71.2
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 71.7
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 71.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 6.0e-80 301.2 205 69.3
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 7.8e-80 300.8 205 70.7
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 69.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.3e-79 300.1 202 72.3
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 3.0e-79 298.9 201 71.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 205 70.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 203 70.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.9e-78 296.2 202 68.8
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.5e-78 295.8 213 67.6
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.5e-78 295.8 202 70.3
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.5e-78 295.8 202 70.3
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.5e-78 295.8 203 70.0
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 67.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 69.3
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 5.6e-78 294.7 205 68.3
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 7.3e-78 294.3 200 70.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.6e-77 293.1 203 67.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.1e-77 292.7 204 70.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.6e-77 292.0 203 67.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 3.6e-77 292.0 194 70.6
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.7e-77 291.6 206 68.9
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 6.2e-77 291.2 202 68.3
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 6.2e-77 291.2 193 69.9
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.8e-75 284.6 202 68.3
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.3e-74 283.5 203 69.0
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.2e-74 282.7 203 66.5
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-73 280.4 204 67.2
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.4e-73 279.3 202 67.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.4e-73 279.3 207 63.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.2e-73 278.9 202 66.8
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.1e-73 277.7 202 67.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.7e-71 273.1 203 67.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.9e-70 269.6 205 59.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 9.9e-67 257.3 199 57.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.7e-66 255.4 206 57.8
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 8.4e-66 254.2 205 62.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.2e-64 250.4 193 62.7
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 7.3e-62 241.1 207 54.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.7e-55 219.9 212 53.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 2.5e-54 216.1 139 75.5
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.3e-54 215.7 210 53.8
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 9.6e-54 214.2 210 52.4
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.8e-53 211.8 143 73.4
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-52 209.1 145 69.7
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.0e-52 207.6 138 72.5
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.2e-51 207.2 204 54.4
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.2e-50 203.0 144 70.8
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-45 186.8 147 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.4e-44 183.7 206 47.6
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 5.8e-43 178.3 166 56.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.9e-41 173.3 180 53.9
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.3e-39 167.2 131 61.8
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.6e-29 133.7 191 39.3
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 5.3e-28 128.6 99 65.7
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 6.5e-26 121.7 197 38.1
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.2e-25 118.2 188 36.7
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.5e-24 115.9 128 50.0
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.9e-24 114.8 66 75.8
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.0e-23 114.4 137 47.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.3e-22 109.0 74 64.9
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.6e-19 99.8 69 71.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-15 87.8 68 61.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-15 87.0 65 66.2
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.3e-14 82.8 51 76.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 4.5e-11 72.4 69 60.9
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 7.2e-09 65.1 43 60.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.7e-08 62.4 49 59.2
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.7e-08 62.4 49 59.2
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.0e-07 59.7 118 33.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.6e-06 56.6 35 68.6


User provided reference genes

Program Settings