Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.6e-225 783.9 443 100.0
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.7e-185 651.0 447 81.4
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 6.7e-177 624.4 448 76.1
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.3e-166 588.2 448 75.0
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 7.0e-166 587.8 450 77.6
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.9e-164 582.4 449 76.8
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 3.2e-163 578.9 448 77.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 7.2e-163 577.8 448 74.3
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.3e-156 557.0 447 73.6
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 7.5e-152 541.2 452 73.2
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 9.4e-147 524.2 449 69.7
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.7e-146 521.9 448 66.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.8e-144 514.2 449 71.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.4e-142 509.6 449 70.6
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 9.1e-142 507.7 451 66.7
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 5.9e-141 505.0 449 67.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.3e-140 503.1 446 69.3
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.3e-140 503.1 455 64.6
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.9e-140 502.7 449 69.3
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-139 500.7 450 68.2
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.0e-138 494.6 467 64.9
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 5.2e-137 491.9 456 64.7
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 5.2e-137 491.9 456 64.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.5e-136 490.3 450 67.8
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.4e-134 481.9 470 62.6
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.0e-133 479.9 466 66.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 5.9e-133 478.4 452 66.2
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 7.8e-133 478.0 449 64.4
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-132 477.6 451 67.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.0e-132 477.6 428 69.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-131 473.4 451 64.3
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.5e-131 473.0 454 66.1
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 5.2e-129 465.3 452 65.3
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.3e-127 460.7 428 68.9
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.9e-127 459.5 453 60.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 8.3e-127 458.0 456 63.4
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.6e-125 452.2 449 59.9
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 6.0e-125 451.8 448 64.5
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.3e-124 449.9 453 63.6
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.3e-123 446.0 452 63.9
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.2e-122 444.1 452 61.1
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.8e-122 443.0 452 63.5
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 4.7e-122 442.2 455 63.7
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 8.0e-122 441.4 449 63.3
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.1e-121 439.5 458 62.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 4.0e-121 439.1 422 56.6
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.6e-120 436.4 452 62.4
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.4e-120 436.0 452 63.5
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.5e-120 434.9 448 64.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.5e-120 434.9 448 64.3
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.8e-120 434.5 449 63.5
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.3e-119 434.1 449 62.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.9e-118 430.3 449 55.7
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 9.2e-118 427.9 447 62.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.6e-117 425.6 447 62.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.0e-116 424.5 466 57.1
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.9e-116 422.5 453 59.2
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.8e-114 416.4 449 62.1
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.2e-114 415.2 415 64.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.2e-104 384.4 448 58.9
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.1e-102 377.9 424 59.9
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.4e-102 377.5 450 58.2
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-100 370.9 454 57.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.9e-99 367.1 443 50.6
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 7.3e-99 365.2 460 54.8
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.1e-97 359.8 376 62.0
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.0e-97 359.4 444 52.9
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.7e-87 327.4 425 56.5
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 4.9e-87 325.9 444 52.0
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.2e-86 322.8 443 45.1
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.7e-85 320.1 463 53.6
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.0e-80 303.9 438 44.3
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.8e-79 299.7 442 49.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.2e-77 294.7 233 62.7
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.7e-76 288.9 367 59.4
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.1e-65 253.4 468 46.4
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 3.1e-65 253.4 443 44.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 3.6e-61 240.0 470 47.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.6e-53 213.4 147 68.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.6e-53 213.4 147 68.7
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.2e-46 189.9 480 37.3
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 4.4e-43 179.9 447 34.9
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.6e-40 171.4 376 46.5
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-40 170.2 229 42.4
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-40 170.2 229 42.4
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 7.7e-40 169.1 426 35.9
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 5.0e-39 166.4 287 39.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.9e-38 164.5 271 41.0
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 7.2e-38 162.5 158 51.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.4e-38 162.2 448 32.4
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-37 161.8 463 32.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.2e-37 161.8 426 32.6
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.2e-37 161.8 426 32.4
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.6e-37 161.4 441 34.9
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.1e-37 161.0 139 54.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.6e-37 160.2 456 30.0
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.7e-37 159.8 154 48.7
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.1e-37 159.5 271 38.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 8.0e-37 159.1 310 36.5
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.0e-37 159.1 449 34.1
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.0e-36 158.7 161 49.1
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.0e-36 158.7 157 48.4
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.4e-36 158.3 193 46.6
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.4e-36 158.3 440 29.3
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.8e-36 157.9 140 52.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.8e-36 157.9 222 41.0
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.8e-36 157.9 448 40.2
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 2.3e-36 157.5 169 46.2
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.0e-36 156.8 157 47.8
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.0e-36 156.8 464 31.9
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.2e-36 156.4 156 50.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 6.8e-36 156.0 456 38.6
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 8.8e-36 155.6 275 37.5
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.0e-35 154.5 145 53.1
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 140 53.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 140 53.6
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.6e-35 154.1 446 35.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.4e-35 153.7 128 56.2
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.4e-35 153.7 447 34.2
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.4e-35 153.7 464 31.2
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.4e-35 153.7 147 49.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.4e-35 153.3 437 32.5
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.4e-35 153.3 170 46.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 5.7e-35 152.9 268 35.8
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.7e-35 152.9 436 35.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 7.5e-35 152.5 132 53.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 9.8e-35 152.1 154 48.1
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 9.8e-35 152.1 422 28.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.8e-35 152.1 277 39.0
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 9.8e-35 152.1 128 53.1
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 9.8e-35 152.1 304 36.5
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.3e-34 151.8 445 33.3
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.7e-34 151.4 262 35.9
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.8e-34 150.6 126 56.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.8e-34 150.6 269 36.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 6.3e-34 149.4 128 53.9
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 6.3e-34 149.4 433 39.0
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.1e-33 148.7 269 36.8
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.4e-33 148.3 445 32.8
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.4e-33 148.3 281 35.2
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.4e-33 148.3 128 53.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.4e-33 147.5 138 49.3
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.4e-33 146.4 126 52.4
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 5.4e-33 146.4 429 35.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.0e-33 146.0 147 46.9
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.6e-32 144.8 126 52.4
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.6e-32 144.8 126 52.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.0e-32 144.4 126 54.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 3.5e-32 143.7 164 47.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.9e-32 142.9 429 29.4
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 7.7e-32 142.5 461 32.5
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 2.9e-31 140.6 126 50.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.5e-31 139.0 434 27.9
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 8.5e-31 139.0 78 84.6
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.1e-30 138.7 150 50.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.9e-30 137.9 452 38.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 4.2e-30 136.7 269 35.3
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.3e-28 131.0 444 28.6
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 1.4e-09 68.6 198 36.4
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.6e-08 63.5 61 52.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.7e-07 61.6 122 34.4
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.5e-06 58.5 84 38.1


User provided reference genes

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