Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 6.2e-197 690.6 358 100.0
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 5.9e-123 444.9 374 62.3
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 3.2e-121 439.1 372 61.6
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.0e-119 434.1 370 61.4
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 3.9e-119 432.2 372 60.5
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.3e-117 427.2 375 61.3
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.8e-116 423.3 369 59.3
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.8e-116 423.3 372 59.7
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 2.4e-116 422.9 363 62.0
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.5e-113 413.7 369 58.5
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.6e-112 410.2 376 58.0
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.4e-111 407.1 365 59.2
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.8e-111 406.8 366 58.2
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 1.5e-110 403.7 363 58.1
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.0e-110 403.3 368 57.6
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 3.3e-110 402.5 342 63.2
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.6e-107 393.7 373 55.0
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 4.5e-107 392.1 357 56.6
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.9e-105 386.7 366 56.0
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.4e-103 380.6 356 55.1
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 5.7e-102 375.2 358 54.7
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 7.5e-102 374.8 480 47.5
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 9.8e-102 374.4 369 53.9
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 8.3e-101 371.3 356 55.6
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 3.1e-100 369.4 370 53.8
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 5.4e-100 368.6 356 55.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 5.9e-99 365.2 372 53.8
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 5.9e-99 365.2 363 54.0
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 7.2e-97 358.2 407 48.6
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 9.5e-97 357.8 373 52.0
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.1e-96 356.7 380 50.5
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 2.8e-96 356.3 355 53.2
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 8.0e-96 354.8 359 52.9
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.8e-95 353.6 357 53.2
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 2.3e-95 353.2 366 51.1
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.0e-95 352.8 366 52.2
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 6.8e-95 351.7 372 51.6
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 6.8e-95 351.7 502 41.8
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.6e-94 349.7 367 49.9
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 6.3e-93 345.1 519 40.1
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 6.3e-93 345.1 363 52.1
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.0e-91 340.1 380 48.4
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 5.9e-91 338.6 374 48.9
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.3e-90 337.4 368 48.1
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.3e-90 337.4 368 48.1
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.9e-90 336.3 376 48.9
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 5.0e-90 335.5 355 51.0
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 5.0e-90 335.5 407 46.9
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.1e-89 334.3 372 50.3
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 9.5e-89 331.3 364 47.8
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.6e-88 330.5 370 49.2
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 8.0e-88 328.2 374 47.3
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.0e-87 327.8 375 46.9
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.8e-87 327.0 357 50.4
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.8e-87 327.0 381 48.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 3.0e-87 326.2 362 49.2
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 3.0e-87 326.2 362 49.7
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 2.0e-86 323.6 365 48.5
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.4e-86 322.8 366 49.2
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.5e-86 321.6 394 47.0
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.7e-85 320.5 358 50.8
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.7e-85 319.3 361 48.5
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 3.7e-85 319.3 394 46.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 4.9e-85 318.9 368 48.6
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 7.0e-84 315.1 351 47.9
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 9.2e-84 314.7 494 41.3
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 5.0e-82 308.9 363 46.3
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.5e-81 307.4 363 45.7
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.9e-81 307.0 326 52.5
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.5e-81 306.6 384 44.8
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 5.6e-81 305.4 349 47.0
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 2.1e-80 303.5 369 45.3
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 3.1e-79 299.7 349 46.7
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.5e-78 297.4 262 57.6
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.7e-77 293.9 368 45.4
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 3.7e-77 292.7 358 45.0
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 4.1e-76 289.3 262 56.5
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 2.1e-75 287.0 330 48.2
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 1.0e-74 284.6 341 46.3
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 3.0e-74 283.1 338 47.0
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 6.6e-74 282.0 360 46.7
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 8.6e-74 281.6 351 43.9
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.1e-73 281.2 369 45.0
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.5e-73 280.8 326 50.0
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 3.3e-73 279.6 338 46.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.9e-69 266.5 364 43.4
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 4.7e-64 249.2 330 43.9
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 8.1e-64 248.4 321 45.5
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.4e-62 242.7 229 55.9
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 3.5e-59 233.0 288 50.3
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 5.6e-57 225.7 170 64.7
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.2e-54 218.0 336 37.8
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 2.6e-54 216.9 240 50.4
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 2.9e-53 213.4 198 52.0
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 8.4e-53 211.8 213 53.5
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.1e-52 211.5 244 50.4
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 4.2e-52 209.5 244 50.0
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.7e-51 206.8 244 49.2
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 6.0e-51 205.7 211 51.7
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 2.1e-48 197.2 228 44.7
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 1.4e-47 194.5 336 36.9
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.4e-44 184.5 191 53.4
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.9e-44 184.1 236 45.8
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.6e-43 181.0 343 35.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.3e-41 172.9 131 65.6
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.0e-39 166.4 209 45.5
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.5e-38 164.5 131 61.8
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.7e-32 143.3 208 43.3
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 6.9e-31 139.0 224 42.4
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.8e-26 124.4 345 27.5
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 4.3e-25 119.8 126 52.4
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 8.5e-21 105.5 92 54.3
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 5.7e-17 92.8 106 47.2
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.3e-16 91.7 110 43.6
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.3e-16 91.7 110 43.6
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.4e-15 87.4 113 44.2
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 5.9e-14 82.8 81 53.1
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 6.5e-13 79.3 85 47.1
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 5.5e-12 76.3 380 21.3
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.2e-11 75.1 97 42.3


User provided reference genes

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