Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 1.2e-287 993.4 1003 100.0
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 3.6e-109 400.6 847 68.9
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 9.1e-105 386.0 524 50.8
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 1.5e-104 385.2 526 50.4
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 3.0e-100 370.9 837 67.5
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 4.8e-98 363.6 842 66.3
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 6.3e-98 363.2 496 56.2
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 1.1e-97 362.5 847 67.7
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 5.5e-94 350.1 524 50.8
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-93 349.0 524 49.4
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 1.6e-93 348.6 524 47.9
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 4.7e-93 347.1 524 53.6
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.5e-91 342.0 500 49.6
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 7.0e-89 333.2 837 65.9
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 3.8e-87 327.4 842 61.0
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 6.1e-85 320.1 839 60.2
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 5.2e-84 317.0 800 56.9
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-83 315.8 700 38.9
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 9.5e-78 296.2 852 51.6
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-77 295.8 305 52.5
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-76 292.7 305 51.8
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 2.3e-76 291.6 305 51.8
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 3.7e-74 284.3 839 62.7
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 2.1e-69 268.5 837 62.5
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 3.6e-69 267.7 837 62.5
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 3.5e-64 251.1 804 59.2
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 4.6e-64 250.8 834 63.2
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 7.3e-62 243.4 526 53.4
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 4.7e-61 240.7 530 37.7
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 4.7e-61 240.7 518 34.2
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 5.2e-60 237.3 850 56.5
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 3.4e-59 234.6 838 59.1
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 3.7e-58 231.1 520 39.6
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 2.4e-57 228.4 830 28.2
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 2.1e-56 225.3 507 51.5
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 1.1e-54 219.5 524 49.2
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 5.6e-54 217.2 530 37.4
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 7.3e-54 216.9 858 55.9
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.1e-52 213.0 519 38.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.4e-52 212.6 796 63.7
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 2.3e-52 211.8 848 53.8
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 8.4e-50 203.4 831 53.9
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 1.9e-49 202.2 510 37.5
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 3.5e-48 198.0 502 46.4
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 7.8e-48 196.8 836 48.0
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 1.0e-47 196.4 518 37.1
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 8.6e-47 193.4 783 45.2
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 7.3e-46 190.3 848 52.6
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 9.6e-46 189.9 852 56.2
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 1.5e-43 182.6 265 41.5
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 2.6e-43 181.8 510 36.1
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 2.6e-43 181.8 510 36.1
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 2.6e-43 181.8 516 43.8
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 9.9e-43 179.9 497 42.9
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 2.9e-42 178.3 642 69.0
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 7.8e-40 170.2 361 43.5
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.9e-39 167.9 303 36.0
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 3.3e-38 164.9 510 34.3
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 6.9e-36 157.1 826 51.3
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 3.4e-35 154.8 513 43.1
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 4.9e-34 151.0 277 33.9
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.1e-33 149.8 837 54.7
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 3.2e-33 148.3 586 65.7
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.2e-33 148.3 199 41.2
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 4.5e-27 127.9 294 35.0
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 1.3e-26 126.3 389 51.7
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 1.7e-26 125.9 144 45.1
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 8.4e-26 123.6 189 38.1
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 3.2e-25 121.7 150 44.7
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 3.2e-25 121.7 150 44.7
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 4.6e-24 117.9 114 50.9
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 6.7e-23 114.0 179 35.2
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 1.9e-22 112.5 144 42.4
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 8.1e-21 107.1 262 56.1
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 4.0e-20 104.8 153 39.2
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 8.7e-15 87.0 100 41.0
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 1.1e-14 86.7 197 29.9
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 3.1e-12 78.6 109 35.8
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 2.0e-11 75.9 200 25.5
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 4.5e-11 74.7 158 30.4
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.3e-10 73.2 146 32.2
Nitab4.5_0005512g0030 Nicotiana tabacum HOM05D000508 ORTHO05D000371 2.2e-10 72.4 45 66.7
Phvul.005G033500 Phaseolus vulgaris HOM05D005973 ORTHO05D007285 2.2e-10 72.4 220 25.5
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 2.9e-10 72.0 206 26.2
FAN03G2603 Fragaria x ananassa HOM05D005973 ORTHO05D007285 2.9e-10 72.0 206 27.7
Sopen01g030120 Solanum pennellii HOM05D005973 ORTHO05D007285 2.9e-10 72.0 198 25.3
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 5.0e-10 71.2 206 25.7
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 6.5e-10 70.9 198 25.3
SGA_v2.0_scaffold354G49737 Striga asiatica HOM05D005973 ORTHO05D007285 8.4e-10 70.5 194 25.3
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 2.5e-09 68.9 203 26.6
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 7.2e-09 67.4 163 27.0
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 7.2e-09 67.4 208 25.5
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 9.3e-09 67.0 109 34.9
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 9.3e-09 67.0 109 34.9
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 9.3e-09 67.0 109 34.9
Os07g0179000 Oryza sativa ssp. japonica HOM05D005973 ORTHO05D007285 1.6e-08 66.2 197 23.4
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.5e-08 65.1 76 43.4
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 1.0e-07 63.5 211 23.2
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.3e-07 63.2 116 31.0
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.8e-07 62.8 166 24.7
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.8e-07 62.8 115 29.6
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 2.3e-07 62.4 199 23.6
AT1G26500 Arabidopsis thaliana HOM05D005622 ORTHO05D002854 3.9e-07 61.6 180 29.4
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 3.9e-07 61.6 98 32.7
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 5.1e-07 61.2 110 31.8
AagrBONN_evm.TU.Sc2ySwM_369.214 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.7e-07 60.8 180 25.6
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 6.7e-07 60.8 206 21.4
Aa31LG6G2840 Aethionema arabicum HOM05D005973 ORTHO05D007285 8.7e-07 60.5 214 21.0
Thhalv10005782m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 8.7e-07 60.5 192 25.0
FAN17G0216 Fragaria x ananassa HOM05D005622 ORTHO05D002854 8.7e-07 60.5 164 29.3
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 8.7e-07 60.5 115 28.7
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 8.7e-07 60.5 115 28.7
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 8.7e-07 60.5 115 28.7
AagrBONN_evm.TU.Sc2ySwM_362.261 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-06 60.1 180 25.0
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 1.1e-06 60.1 169 26.6
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 1.1e-06 60.1 119 27.7
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.1e-06 60.1 167 25.7
FAN07G1209 Fragaria x ananassa HOM05D005622 ORTHO05D002854 1.5e-06 59.7 260 24.2
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.5e-06 59.7 166 24.1
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.9e-06 59.3 197 23.4
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 2.5e-06 58.9 195 25.1
AagrBONN_evm.TU.Sc2ySwM_228.2884 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 180 24.4
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 3.3e-06 58.5 223 23.3
MSTRG.27162 Avicennia marina HOM05D005973 ORTHO05D007285 3.3e-06 58.5 253 20.9
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 3.3e-06 58.5 111 31.5
Psat3g098480 Pisum sativum HOM05D008684 ORTHO05D010796 3.3e-06 58.5 270 23.7
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 3.3e-06 58.5 166 24.1
AagrBONN_evm.TU.Sc2ySwM_369.159 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-06 58.2 176 25.0
Lalb_Chr10g0091291 Lupinus albus HOM05D008684 ORTHO05D010796 4.3e-06 58.2 185 26.5
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.3e-06 58.2 99 37.4
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.3e-06 58.2 163 22.1
AagrBONN_evm.TU.Sc2ySwM_117.4160 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-06 57.8 178 27.0
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 5.7e-06 57.8 198 24.2
FAN22G2146 Fragaria x ananassa HOM05D005622 ORTHO05D002854 5.7e-06 57.8 221 26.2
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 5.7e-06 57.8 137 27.0
EL10Ac2g04472 Beta vulgaris HOM05D002007 ORTHO05D000355 7.4e-06 57.4 119 31.1
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 7.4e-06 57.4 120 28.3
AT1G20230 Arabidopsis thaliana HOM05D000001 ORTHO05D009837 9.7e-06 57.0 189 21.2
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 9.7e-06 57.0 111 29.7
Lalb_Chr22g0354121 Lupinus albus HOM05D000001 ORTHO05D000003 9.7e-06 57.0 217 24.0
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 9.7e-06 57.0 178 25.8
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 9.7e-06 57.0 195 23.6
Sc14g0002110 Simmondsia chinensis HOM05D000424 ORTHO05D000355 9.7e-06 57.0 99 33.3


User provided reference genes

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