Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1937.5 1002 100.0
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1357.0 1002 70.2
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1355.1 1004 69.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1278.1 1000 67.5
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1198.3 1003 62.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1189.1 1007 62.0
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1168.3 957 62.9
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 0.0e+00 1159.4 1045 59.2
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1146.7 1051 58.6
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1140.9 941 63.1
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1138.3 1012 58.6
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1135.6 1005 58.6
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1131.7 1005 58.6
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1128.2 1023 59.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1113.6 1012 58.4
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 0.0e+00 1109.4 944 60.6
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1102.0 1009 57.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 0.0e+00 1094.0 965 60.4
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1090.5 1008 58.0
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1090.1 1009 57.3
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1085.1 1002 57.1
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.7e-311 1072.0 1012 55.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.2e-310 1067.8 1023 55.5
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 3.4e-309 1065.1 1012 56.0
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.8e-308 1062.0 1012 55.6
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.1e-307 1058.1 1006 56.4
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 3.6e-295 1018.5 1004 55.0
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.9e-292 1008.8 1003 53.6
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 3.2e-291 1005.4 1017 53.1
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 5.4e-291 1004.6 900 59.2
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.9e-288 996.1 880 59.3
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 7.5e-285 984.2 1009 52.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 9.8e-285 983.8 1069 52.0
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.1e-283 980.3 1038 52.3
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 6.0e-282 974.5 1028 50.8
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 5.6e-280 968.0 998 51.6
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 4.0e-278 961.8 968 53.1
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 8.9e-278 960.7 1002 51.0
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 5.8e-277 958.0 987 52.2
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.1e-275 953.7 892 56.1
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 4.1e-275 951.8 967 53.7
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 4.6e-274 948.3 1021 50.4
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.8e-270 936.4 1003 51.2
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 5.2e-270 934.9 1003 50.9
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 5.2e-270 934.9 986 51.5
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 8.9e-270 934.1 1008 51.4
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 7.6e-269 931.0 1035 49.4
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.0e-265 920.6 1050 48.4
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.7e-265 919.8 983 50.2
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.9e-264 916.4 983 49.3
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.3e-263 913.7 1006 49.2
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 3.1e-262 909.1 994 49.4
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 6.9e-262 907.9 965 51.8
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.5e-261 906.7 995 49.9
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 5.8e-261 904.8 1010 49.4
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 2.2e-260 902.9 1027 48.4
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 8.4e-260 901.0 1026 48.7
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 4.2e-259 898.7 987 48.1
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 7.9e-258 894.4 993 48.3
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 3.9e-257 892.1 984 49.3
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 5.1e-257 891.7 992 48.2
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 6.6e-257 891.3 990 49.3
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 5.3e-254 881.7 1001 47.1
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 6.9e-254 881.3 1009 48.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.2e-253 880.6 1016 47.5
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.3e-252 877.1 1000 47.8
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.2e-252 876.3 996 48.6
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 3.8e-252 875.5 990 47.9
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 4.2e-251 872.1 1004 48.0
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 5.5e-251 871.7 1000 47.6
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.5e-248 863.6 895 52.0
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.5e-248 862.8 834 56.0
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 9.0e-246 854.4 901 50.7
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.0e-245 853.2 985 47.1
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 3.5e-242 842.4 1012 46.4
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 4.6e-242 842.0 927 50.4
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 8.7e-241 837.8 901 50.5
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 6.5e-236 821.6 878 49.2
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 6.5e-236 821.6 768 56.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 4.2e-235 818.9 968 47.5
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 5.7e-232 808.5 907 49.5
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 9.7e-232 807.7 1015 44.8
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.3e-231 807.4 1006 45.2
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 5.3e-230 802.0 1004 44.6
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 3.4e-229 799.3 1009 43.2
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.9e-228 796.2 937 48.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.0e-225 786.2 1001 43.6
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 2.6e-221 773.1 1041 43.9
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 6.5e-220 768.5 1037 44.6
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 4.2e-219 765.8 655 60.9
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 9.1e-214 748.0 705 55.3
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 3.2e-211 739.6 898 46.2
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 2.7e-202 709.9 814 46.6
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 3.6e-194 682.9 890 46.0
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 1.8e-190 670.6 831 43.8
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 2.0e-189 667.2 1013 38.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 2.8e-186 656.8 681 51.2
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 5.4e-182 642.5 938 43.4
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 7.3e-179 632.1 1041 37.0
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.4e-144 516.9 1004 33.4
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 7.9e-141 505.8 911 34.4
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 3.3e-70 271.2 646 31.6
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 4.1e-65 254.2 1002 24.8
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-59 236.1 270 47.8
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 4.9e-58 230.7 322 42.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 8.3e-58 229.9 186 61.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.6e-45 189.1 728 25.8
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.5e-35 156.0 133 63.2
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 5.1e-31 141.0 677 23.8
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.4e-28 132.9 639 24.1
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 9.3e-25 120.2 136 50.7
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.4e-20 106.3 792 21.3
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 3.1e-12 78.6 121 33.9
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 2.5e-09 68.9 73 47.9
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 6.7e-07 60.8 50 62.0


User provided reference genes

Program Settings