Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 8.3e-170 600.5 353 100.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.1e-117 426.4 346 71.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.8e-117 426.0 351 67.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.9e-113 413.3 352 70.2
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.4e-113 412.9 347 70.6
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.2e-112 410.6 351 65.5
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.9e-110 403.3 349 65.3
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 5.6e-110 401.7 348 65.5
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.4e-108 397.1 350 63.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.5e-107 393.7 352 63.4
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 5.8e-107 391.7 350 66.3
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 5.8e-107 391.7 350 66.3
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.5e-104 382.5 347 67.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.7e-103 377.9 350 65.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.5e-102 377.1 351 59.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.5e-102 377.1 350 63.7
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.5e-102 377.1 350 63.7
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.3e-101 374.0 350 61.4
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.8e-101 372.9 322 71.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.8e-101 372.9 351 62.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.8e-100 370.2 346 62.4
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.8e-100 370.2 350 68.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.4e-100 369.8 342 67.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.0e-100 369.0 334 70.4
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.3e-100 368.6 350 59.4
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.4e-99 365.9 349 59.3
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 6.5e-98 361.7 359 62.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.4e-97 360.5 337 63.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 4.6e-96 355.5 351 62.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.9e-95 352.4 348 60.6
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 5.1e-95 352.1 351 63.5
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.5e-94 349.7 350 60.6
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.3e-93 347.4 353 60.9
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.6e-93 347.1 345 57.4
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.1e-93 346.7 345 61.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.8e-93 345.5 342 62.9
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.8e-90 335.9 340 59.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 6.5e-90 335.1 333 59.5
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 9.3e-89 331.3 346 59.5
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.6e-88 330.5 353 58.1
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.6e-88 330.5 353 58.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.0e-87 327.8 351 57.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-87 327.0 352 58.2
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.3e-87 326.6 353 54.4
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.9e-87 325.9 353 55.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.1e-86 324.3 353 55.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.3e-86 322.4 348 54.6
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 7.4e-86 321.6 332 61.7
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.2e-85 320.1 353 57.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-83 312.4 352 56.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-83 312.4 352 56.0
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.9e-82 309.7 335 54.3
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 2.9e-82 309.7 340 53.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 3.8e-82 309.3 335 54.9
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.5e-81 306.6 325 59.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 4.2e-81 305.8 358 53.6
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 7.9e-80 301.6 354 56.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 3.0e-79 299.7 335 56.7
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 5.1e-79 298.9 345 53.3
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 6.7e-79 298.5 367 50.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 6.7e-79 298.5 348 56.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-78 297.0 349 52.4
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.4e-78 295.8 358 51.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 5.7e-78 295.4 354 52.5
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 9.7e-78 294.7 357 51.5
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.3e-77 294.3 353 50.1
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 6.3e-77 292.0 345 51.6
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.4e-76 290.8 348 56.9
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-76 289.7 340 50.9
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-76 289.7 350 51.1
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.1e-76 289.7 350 51.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 5.3e-76 288.9 336 52.4
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 5.3e-76 288.9 336 52.4
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.2e-75 287.7 346 51.2
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 3.4e-75 286.2 356 50.8
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.2e-74 283.5 335 51.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 8.5e-74 281.6 374 49.2
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.4e-71 274.2 329 55.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 3.0e-71 273.1 340 53.5
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 3.0e-71 273.1 330 51.8
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.7e-71 271.9 350 51.1
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.3e-70 269.6 348 49.4
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.3e-69 267.7 373 50.4
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.2e-69 266.9 360 48.1
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 3.7e-69 266.2 340 52.9
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 6.3e-69 265.4 274 60.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.1e-68 264.6 386 46.6
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.4e-68 264.2 321 51.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 4.5e-67 259.2 331 50.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 7.7e-67 258.5 361 49.6
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.2e-62 244.6 344 45.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 4.8e-61 239.2 333 46.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.8e-60 237.3 328 47.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 7.0e-60 235.3 346 45.4
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 9.1e-60 235.0 349 51.0
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.9e-59 232.3 341 50.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 7.7e-59 231.9 349 50.4
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.7e-58 230.7 338 49.1
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.2e-58 230.3 337 49.3
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 8.5e-58 228.4 350 46.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.2e-57 226.5 300 50.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.7e-56 223.4 341 44.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 6.1e-56 222.2 367 43.3
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 6.1e-56 222.2 335 44.8
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 2.6e-54 216.9 292 56.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 7.5e-54 215.3 328 43.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 9.8e-54 214.9 341 50.4
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.2e-53 213.8 343 44.0
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-52 211.5 333 46.8
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-52 211.5 333 46.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.0e-50 204.9 329 46.8
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.7e-50 204.1 342 40.9
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 2.3e-50 203.8 336 43.2
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.5e-50 202.2 340 40.6
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 9.5e-49 198.4 350 39.7
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.0e-47 193.4 293 45.4
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 9.8e-46 188.3 354 41.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.2e-43 181.4 359 38.4
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-42 177.9 204 55.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-42 177.6 194 68.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 4.0e-39 166.4 355 35.8
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.2e-38 164.9 351 35.9
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.4e-36 157.9 289 39.8
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 4.1e-36 156.4 318 35.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 7.0e-36 155.6 310 38.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.7e-34 151.0 131 61.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.9e-33 147.5 358 38.0
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.6e-33 146.0 252 45.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 6.2e-32 142.5 315 34.0
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 8.0e-32 142.1 367 34.6
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-31 141.7 319 36.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.3e-31 140.6 143 56.6
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.9e-28 131.0 328 32.0
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 7.8e-27 125.6 168 51.8
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-25 120.9 160 46.2
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.9e-23 112.1 106 56.6
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 8.3e-21 105.5 248 35.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 3.5e-19 100.1 89 57.3
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 2.5e-17 94.0 448 26.1
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 6.8e-15 85.9 144 39.6
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.5e-14 84.7 348 29.9
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.7e-13 81.3 102 50.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.7e-11 73.9 86 47.7
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 3.3e-09 67.0 122 37.7
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 9.6e-09 65.5 177 33.3
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.6e-08 64.7 90 42.2
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 6.9e-07 59.3 47 61.7
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 9.0e-07 58.9 64 50.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 3.4e-06 57.0 64 48.4
SEGI_33577 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 9.9e-06 55.5 44 59.1


User provided reference genes

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