Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 1.4e-70 269.6 148 100.0
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 2.2e-55 219.2 140 83.6
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 5.7e-48 194.5 140 72.9
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.4e-46 189.9 140 75.0
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 4.1e-46 188.3 142 75.4
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 6.5e-44 181.0 140 72.1
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 6.5e-44 181.0 138 74.6
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.5e-43 179.9 140 69.3
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 2.5e-43 179.1 140 73.6
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 4.2e-43 178.3 140 74.3
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 9.5e-43 177.2 140 71.4
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.6e-42 176.4 140 70.0
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.8e-42 175.6 140 73.6
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 3.6e-42 175.3 140 69.3
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.0e-41 173.7 141 68.8
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.8e-41 172.9 140 67.9
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 6.8e-41 171.0 140 66.4
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 6.8e-41 171.0 140 68.6
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 1.2e-40 170.2 140 67.1
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 4.4e-40 168.3 140 70.7
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 7.5e-40 167.5 140 67.1
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 7.5e-40 167.5 140 68.6
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 2.2e-39 166.0 140 66.4
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 2.2e-39 166.0 138 68.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 1.4e-38 163.3 130 74.6
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.8e-38 162.9 134 70.1
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 3.1e-38 162.2 140 65.7
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 1.6e-37 159.8 140 65.0
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 3.5e-37 158.7 165 60.0
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 7.8e-37 157.5 165 59.4
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.0e-36 157.1 138 65.9
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.0e-36 157.1 138 65.9
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 1.7e-36 156.4 141 65.2
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.7e-36 156.4 138 66.7
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 3.8e-36 155.2 132 68.9
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.1e-35 153.7 138 64.5
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.5e-35 153.3 140 64.3
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 2.5e-35 152.5 140 60.7
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 1.6e-34 149.8 132 66.7
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 2.1e-34 149.4 136 62.5
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 2.8e-34 149.1 122 69.7
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.8e-34 149.1 141 64.5
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 3.6e-34 148.7 140 63.6
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 3.6e-34 148.7 136 63.2
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 4.7e-34 148.3 122 72.1
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 8.0e-34 147.5 143 62.2
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 8.0e-34 147.5 138 64.5
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.4e-33 146.7 138 60.9
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 3.0e-33 145.6 139 59.7
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 6.8e-33 144.4 133 65.4
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.0e-32 142.9 141 58.2
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 2.6e-32 142.5 143 59.4
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 3.4e-32 142.1 124 64.5
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 9.8e-32 140.6 140 62.9
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.3e-31 140.2 140 60.7
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.7e-31 139.8 138 58.0
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 6.4e-31 137.9 141 57.4
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 6.4e-31 137.9 135 62.2
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 6.4e-31 137.9 141 56.7
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.4e-30 136.7 124 63.7
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.2e-30 135.6 138 56.5
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.2e-29 133.7 136 58.8
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 2.0e-29 132.9 138 56.5
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 4.6e-29 131.7 125 64.0
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 6.0e-29 131.3 133 60.9
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.7e-28 129.8 145 57.9
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 3.9e-28 128.6 138 58.0
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 5.0e-28 128.3 87 78.2
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 8.6e-28 127.5 140 54.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.5e-27 126.7 131 58.0
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.9e-27 126.3 120 60.8
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 4.3e-27 125.2 119 60.5
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 7.3e-27 124.4 86 80.2
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 7.3e-27 124.4 164 51.2
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 2.1e-26 122.9 116 63.8
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 2.8e-26 122.5 88 75.0
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 4.7e-26 121.7 122 61.5
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 6.2e-26 121.3 131 55.0
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.2e-26 121.3 140 50.0
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.1e-25 120.6 136 52.2
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.8e-25 119.8 138 58.0
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 2.3e-25 119.4 128 58.6
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.3e-25 119.4 85 78.8
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 2.3e-25 119.4 142 52.1
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.2e-24 117.1 141 52.5
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.5e-24 116.7 136 55.9
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 2.0e-24 116.3 123 53.7
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 2.0e-24 116.3 140 50.0
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 5.8e-24 114.8 137 56.9
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 5.8e-24 114.8 136 55.1
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 5.8e-24 114.8 136 55.1
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 5.8e-24 114.8 141 51.8
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.7e-23 113.2 85 70.6
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.9e-23 112.5 130 56.9
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 8.3e-23 110.9 136 53.7
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 8.3e-23 110.9 146 49.3
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.1e-22 110.5 140 51.4
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 3.2e-22 109.0 127 56.7
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.1e-22 108.6 83 71.1
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.3e-20 103.6 123 52.8
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.0e-20 102.4 72 79.2
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 8.6e-20 100.9 141 49.6
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 3.3e-19 99.0 143 46.9
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 7.3e-19 97.8 86 64.0
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 9.5e-19 97.4 94 64.9
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.6e-18 96.7 89 61.8
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.1e-18 96.3 142 50.7
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 5.2e-17 91.7 139 46.8
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 2.0e-16 89.7 72 68.1
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.6e-16 89.4 84 64.3
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 7.5e-16 87.8 83 57.8
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 9.9e-16 87.4 104 58.7
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 3.7e-15 85.5 84 61.9
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 8.3e-15 84.3 116 52.6
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.4e-14 83.6 128 47.7
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 3.2e-14 82.4 64 67.2
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 7.1e-14 81.3 89 58.4
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 9.2e-14 80.9 166 38.6
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 1.6e-13 80.1 86 59.3
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 7.3e-11 71.2 117 48.7
Sabra16G0316500 Salix brachista HOM05D006603 ORTHO05D007786 2.8e-10 69.3 86 51.2
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 1.1e-09 67.4 81 51.9
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 2.4e-09 66.2 80 51.2
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 8.9e-09 64.3 88 54.5
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 3.4e-08 62.4 137 31.4
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 7.6e-08 61.2 53 60.4
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 2.9e-07 59.3 108 43.5
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.9e-07 59.3 132 32.6
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 3.8e-07 58.9 46 71.7
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 3.8e-07 58.9 144 32.6
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 8.4e-07 57.8 141 34.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 8.4e-07 57.8 130 32.3


User provided reference genes

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