Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 6.2e-140 502.3 714 100.0
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 4.2e-64 250.4 717 83.7
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 4.2e-64 250.4 726 83.5
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 4.7e-63 246.9 726 83.2
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 1.5e-61 241.9 688 85.0
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 8.3e-60 236.1 710 77.7
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 1.4e-59 235.3 710 78.2
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.8e-59 235.0 710 78.0
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 5.4e-59 233.4 713 70.8
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 9.2e-59 232.6 663 87.5
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 1.6e-58 231.9 708 81.9
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 3.5e-58 230.7 715 78.9
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.7e-57 228.4 718 82.2
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.7e-57 228.4 710 82.0
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.7e-57 228.4 710 82.0
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.5e-56 225.3 659 87.1
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 2.5e-56 224.6 661 75.6
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 4.3e-56 223.8 715 82.4
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 5.6e-56 223.4 710 82.4
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 7.3e-56 223.0 721 76.0
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 3.0e-54 217.6 688 83.1
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 3.0e-54 217.6 707 80.2
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 4.0e-54 217.2 714 81.9
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.5e-53 215.3 692 83.7
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 3.4e-53 214.2 656 84.1
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 5.7e-53 213.4 717 76.8
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 5.7e-53 213.4 664 85.4
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 8.3e-52 209.5 672 85.1
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.8e-51 208.4 667 84.7
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 2.4e-51 208.0 717 77.4
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 1.6e-50 205.3 643 86.8
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 6.6e-49 199.9 658 84.7
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 1.9e-48 198.4 713 74.2
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 2.1e-47 194.9 689 80.7
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 2.8e-47 194.5 680 81.8
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 2.8e-47 194.5 710 80.6
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 6.2e-47 193.4 693 81.7
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 8.0e-47 193.0 667 84.4
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 8.0e-47 193.0 711 80.2
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.2e-45 189.1 693 80.4
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 2.0e-45 188.3 704 79.4
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 4.4e-45 187.2 714 73.7
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 5.8e-45 186.8 165 63.6
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 7.5e-45 186.4 691 80.3
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 9.8e-45 186.0 707 79.9
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.7e-44 185.3 623 87.6
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 1.7e-44 185.3 693 80.1
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 2.2e-44 184.9 702 74.6
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.9e-44 184.5 668 83.8
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 6.4e-44 183.3 652 70.1
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 6.4e-44 183.3 649 83.8
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 1.1e-43 182.6 684 82.0
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.4e-43 182.2 697 72.5
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 5.4e-43 180.3 192 53.6
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 2.0e-42 178.3 654 66.4
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 6.0e-42 176.8 660 73.3
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.8e-42 176.4 636 76.4
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.8e-42 176.4 132 68.9
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.7e-41 175.3 712 77.9
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 2.3e-41 174.9 177 56.5
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 2.3e-41 174.9 177 56.5
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 3.0e-41 174.5 176 56.8
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 3.0e-41 174.5 176 56.8
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 3.9e-41 174.1 176 56.8
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 1.9e-40 171.8 710 79.4
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 4.3e-40 170.6 144 61.1
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 9.5e-40 169.5 179 56.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 1.6e-39 168.7 673 81.1
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 2.8e-39 167.9 658 74.3
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 4.7e-39 167.2 175 52.6
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 4.7e-39 167.2 643 83.5
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 6.2e-39 166.8 657 77.3
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 1.8e-38 165.2 693 80.4
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.8e-38 165.2 685 70.5
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.3e-38 164.9 704 66.3
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.1e-38 164.5 126 68.3
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 8.9e-38 162.9 689 80.0
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.4e-37 160.6 157 54.8
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.7e-36 158.7 693 79.5
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.9e-35 155.2 696 79.9
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 2.4e-35 154.8 119 65.5
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 4.1e-35 154.1 139 60.4
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 3.5e-34 151.0 637 84.9
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.7e-33 148.7 90 76.7
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 3.0e-33 147.9 115 66.1
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.1e-32 146.0 686 78.6
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 1.9e-32 145.2 87 81.6
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 3.6e-31 141.0 94 77.7
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.3e-30 138.3 113 60.2
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 2.6e-29 134.8 95 70.5
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.6e-29 133.3 95 65.3
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 8.4e-28 129.8 690 62.0
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 5.4e-27 127.1 109 61.5
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.6e-26 125.6 147 48.3
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.7e-26 124.8 85 71.8
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 3.0e-25 121.3 146 50.0
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 3.9e-25 120.9 124 53.2
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 5.6e-24 117.1 149 43.0
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.6e-23 115.5 85 65.9
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.8e-22 112.1 68 76.5
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.5e-21 109.0 75 69.3
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 5.8e-21 107.1 90 61.1
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 5.8e-21 107.1 90 61.1
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.3e-20 105.9 169 41.4
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.1e-19 102.8 157 39.5
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 3.2e-19 101.3 157 38.9
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 9.3e-19 99.8 81 65.4
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.5e-16 91.7 57 73.7
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 1.3e-15 89.4 67 67.2
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-14 86.3 50 82.0
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 2.4e-14 85.1 105 41.9
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 6.9e-14 83.6 106 39.6
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 3.2e-11 74.7 135 33.3
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 3.2e-11 74.7 135 33.3


User provided reference genes

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