Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.3e-51 206.1 98 100.0
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 9.1e-26 120.2 81 74.1
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 3.3e-20 101.7 77 62.3
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 3.3e-20 101.7 74 64.9
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.3e-19 99.8 75 65.3
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.1e-18 96.7 80 63.8
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.4e-18 95.5 80 66.2
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 4.1e-18 94.7 74 62.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 5.3e-18 94.4 98 57.1
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.2e-17 93.2 79 63.3
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.6e-17 92.8 77 58.4
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.6e-17 92.8 74 62.2
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.5e-17 91.3 77 58.4
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.5e-17 91.3 74 59.5
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.9e-17 90.9 74 58.1
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.9e-17 90.9 74 58.1
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 5.9e-17 90.9 75 58.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 7.7e-17 90.5 77 57.1
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 7.7e-17 90.5 77 57.1
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 2.2e-16 89.0 78 62.8
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.9e-16 88.6 77 55.8
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.8e-16 88.2 74 56.8
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 6.5e-16 87.4 79 55.7
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.5e-15 86.3 78 59.0
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.9e-15 85.9 75 58.7
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 2.5e-15 85.5 82 57.3
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.2e-15 85.1 80 56.2
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 4.2e-15 84.7 79 59.5
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 5.5e-15 84.3 77 55.8
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 5.5e-15 84.3 77 55.8
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 5.5e-15 84.3 77 57.1
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 7.2e-15 84.0 78 55.1
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 7.2e-15 84.0 81 60.5
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 9.4e-15 83.6 74 60.8
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.6e-14 82.8 83 53.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.7e-14 82.0 74 50.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.7e-14 82.0 81 59.3
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 6.1e-14 80.9 74 56.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 6.1e-14 80.9 77 54.5
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 8.0e-14 80.5 75 54.7
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.0e-13 80.1 72 47.2
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.4e-13 79.7 77 58.4
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.8e-13 79.3 78 53.8
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 3.0e-13 78.6 72 50.0
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.0e-13 78.6 82 54.9
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 4.0e-13 78.2 74 48.6
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 4.0e-13 78.2 77 53.2
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 5.2e-13 77.8 77 54.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 6.8e-13 77.4 81 54.3
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 6.8e-13 77.4 78 53.8
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 8.8e-13 77.0 77 53.2
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 8.8e-13 77.0 80 53.8
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 8.8e-13 77.0 80 48.8
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 8.8e-13 77.0 77 53.2
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.2e-12 76.6 72 50.0
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.4e-12 75.1 77 54.5
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 3.4e-12 75.1 83 49.4
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 5.7e-12 74.3 78 47.4
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.5e-12 73.9 84 48.8
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.3e-11 73.2 77 48.1
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.2e-11 72.4 81 48.1
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.2e-11 72.4 81 48.1
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 2.8e-11 72.0 77 46.8
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 4.8e-11 71.2 42 73.8
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 8.3e-11 70.5 71 50.7
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.1e-10 70.1 78 48.7
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.8e-10 69.3 83 51.8
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.8e-10 69.3 41 73.2
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 2.4e-10 68.9 77 49.4
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.1e-10 68.2 69 50.7
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 7.0e-10 67.4 69 50.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 7.0e-10 67.4 85 43.5
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 7.0e-10 67.4 76 51.3
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 9.1e-10 67.0 69 50.7
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 9.1e-10 67.0 82 47.6
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.2e-09 66.6 80 46.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.0e-09 65.9 48 62.5
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.5e-09 65.1 68 50.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 5.9e-09 64.3 85 42.4
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 1.3e-08 63.2 71 52.1
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.3e-08 63.2 85 43.5
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.7e-08 62.8 79 46.8
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.2e-08 62.4 80 45.0
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.2e-08 62.4 84 44.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 2.9e-08 62.0 85 42.4
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 3.8e-08 61.6 77 44.2
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 5.0e-08 61.2 77 42.9
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 5.0e-08 61.2 77 42.9
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 5.0e-08 61.2 77 42.9
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 5.0e-08 61.2 78 43.6
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.5e-08 60.8 79 45.6
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.1e-07 60.1 77 46.8
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.1e-07 60.1 77 46.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.1e-07 60.1 80 46.2
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.5e-07 59.7 36 66.7
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.9e-07 59.3 75 45.3
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.9e-07 59.3 72 44.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 2.5e-07 58.9 78 48.7
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.2e-07 58.5 78 46.2
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 9.4e-07 57.0 64 42.2
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.2e-06 56.6 77 44.2
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.6e-06 56.2 81 44.4
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-06 55.8 38 60.5
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-06 55.8 38 60.5
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-06 55.8 38 60.5
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.1e-06 55.8 77 44.2
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.7e-06 55.5 78 39.7


User provided reference genes

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