Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 0.0e+00 1747.6 895 100.0
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 0.0e+00 1527.7 929 86.0
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 0.0e+00 1119.8 926 65.9
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 0.0e+00 1085.9 927 64.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 0.0e+00 1076.6 926 64.5
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.2e-307 1058.9 943 62.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.5e-295 1018.8 939 60.8
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 6.3e-291 1004.2 1000 57.3
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.7e-288 996.1 938 59.0
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 5.5e-287 991.1 915 60.2
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.6e-286 989.6 963 56.9
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.2e-285 984.6 965 57.0
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.1e-284 983.4 935 58.7
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 2.0e-284 982.6 936 59.2
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.5e-279 966.5 998 55.2
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.5e-279 965.7 956 57.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.6e-278 963.0 942 58.1
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.6e-278 963.0 969 56.6
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.6e-278 963.0 940 58.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.6e-276 955.7 956 57.2
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.1e-274 948.7 983 56.4
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 2.0e-273 946.0 961 55.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 5.9e-273 944.5 945 57.8
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.9e-272 942.2 995 55.5
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.2e-270 936.8 990 54.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.3e-269 932.6 936 56.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 6.8e-269 931.0 972 54.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 8.8e-269 930.6 936 56.5
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 8.3e-267 924.1 976 54.7
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 9.1e-266 920.6 946 56.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 4.5e-265 918.3 986 54.6
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.2e-263 911.0 1016 52.3
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.4e-261 906.7 929 55.4
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.3e-259 900.2 929 55.3
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 5.4e-258 894.8 937 54.6
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.6e-257 893.3 939 54.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.9e-256 888.6 880 57.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.0e-256 888.3 1002 51.4
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 9.5e-255 884.0 1038 50.6
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.1e-254 882.9 709 64.3
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.7e-254 881.7 970 53.3
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.0e-253 880.6 958 52.4
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.0e-253 878.6 979 52.0
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 6.8e-253 877.9 940 54.1
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 6.4e-251 871.3 971 53.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 6.0e-249 864.8 953 52.6
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 7.8e-249 864.4 765 60.5
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 3.9e-248 862.1 982 51.1
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.9e-247 859.8 982 52.1
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.5e-247 859.4 981 50.9
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.2e-246 857.1 932 52.7
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.6e-246 856.7 941 53.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.1e-246 856.3 918 53.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.2e-244 850.5 974 51.1
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.3e-243 847.0 933 53.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.1e-242 844.0 973 51.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 3.5e-241 839.0 929 52.7
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.3e-240 836.3 822 56.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 3.0e-240 835.9 964 50.8
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.9e-240 835.5 948 51.4
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 6.6e-240 834.7 993 50.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.9e-239 833.2 1015 48.4
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 7.3e-239 831.2 926 51.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.2e-238 830.5 946 52.2
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 2.8e-238 829.3 934 51.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.4e-237 827.0 993 49.7
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.1e-237 825.9 925 51.4
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.8e-237 824.7 905 52.9
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.6e-236 822.8 992 49.7
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.9e-235 819.3 922 50.4
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.4e-234 817.0 919 51.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 5.4e-234 815.1 936 51.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.0e-233 811.6 929 51.3
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.0e-232 810.8 1001 48.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.7e-232 810.1 1073 45.9
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 8.6e-232 807.7 998 49.3
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.6e-231 805.1 922 50.8
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 5.6e-231 805.1 926 51.1
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.4e-229 800.4 980 49.5
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 2.4e-229 799.7 1011 48.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 4.4e-228 795.4 932 50.2
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.3e-227 793.9 912 51.6
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.9e-227 792.7 980 48.5
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 8.4e-227 791.2 937 50.8
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.4e-226 790.4 939 50.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 5.1e-224 781.9 974 47.9
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.3e-223 779.2 745 55.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.8e-222 776.2 966 48.1
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 4.8e-222 775.4 910 50.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 3.1e-221 772.7 921 48.3
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.9e-221 771.5 913 50.7
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 9.9e-220 767.7 913 50.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 4.9e-219 765.4 992 47.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.9e-218 763.5 666 60.1
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.5e-217 759.2 690 58.3
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 4.6e-217 758.8 670 59.4
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 7.8e-217 758.1 939 49.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 7.8e-217 758.1 912 48.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 6.6e-216 755.0 929 49.1
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 6.6e-216 755.0 664 58.7
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.5e-215 753.1 976 49.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 4.9e-211 738.8 714 55.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.1e-210 737.6 671 58.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 9.3e-210 734.6 808 51.1
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.3e-206 724.2 680 57.5
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.8e-203 712.6 986 45.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.5e-202 708.8 926 49.0
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.3e-200 704.1 744 53.1
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.1e-200 702.2 946 46.8
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 6.2e-198 695.3 742 52.2
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.5e-194 683.3 869 46.3
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 3.2e-186 656.4 758 50.1
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 6.1e-185 652.1 754 49.6
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 6.3e-174 615.5 692 49.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.5e-170 603.6 765 46.4
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.2e-164 584.7 696 47.0
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 3.8e-155 553.1 844 42.9
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.3e-150 538.1 717 43.8
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 7.8e-132 475.7 698 45.8
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-127 461.8 661 41.6
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 6.2e-105 386.3 496 39.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 9.0e-104 382.5 480 41.0
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 4.9e-102 376.7 292 61.6
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.0e-99 369.0 795 32.8
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.2e-93 347.1 462 40.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.7e-39 166.8 115 67.8
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.5e-38 163.7 115 67.8
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 9.8e-34 149.8 373 30.3
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.6e-26 125.2 321 38.0
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 9.2e-24 116.7 169 43.8
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.9e-22 111.3 185 40.5
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 2.5e-13 82.0 101 45.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 7.3e-13 80.5 83 51.8
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 9.5e-13 80.1 133 41.4
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-12 79.7 133 41.4
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-11 76.6 101 44.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 7.1e-08 63.9 66 54.5


User provided reference genes

Program Settings