Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 9.6e-119 430.3 230 100.0
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.5e-58 230.3 209 67.0
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 3.9e-43 179.1 208 57.2
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 3.5e-36 156.0 194 54.1
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 1.3e-30 137.5 213 46.9
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.9e-30 135.6 209 44.5
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 1.7e-27 127.1 209 43.5
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 7.3e-26 121.7 207 45.4
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.1e-25 120.2 209 43.5
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.4e-24 117.5 209 44.0
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 2.4e-24 116.7 209 43.5
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.1e-24 116.3 218 42.7
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 4.0e-24 115.9 207 43.0
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 5.3e-24 115.5 218 45.0
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 9.0e-24 114.8 207 40.1
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 2.6e-23 113.2 205 43.9
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.3e-22 110.9 207 42.0
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 8.4e-22 108.2 225 38.7
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 4.2e-21 105.9 206 42.2
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 5.4e-21 105.5 202 41.1
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 7.1e-21 105.1 216 39.4
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 9.3e-21 104.8 216 38.9
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 1.2e-20 104.4 206 41.7
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.6e-20 104.0 203 41.9
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 3.5e-20 102.8 205 40.0
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 1.0e-19 101.3 227 38.3
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.3e-19 100.1 226 36.7
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.1e-18 97.8 206 41.3
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.5e-18 96.7 209 38.3
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 3.3e-18 96.3 220 37.7
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 3.3e-18 96.3 215 40.0
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 9.6e-18 94.7 219 37.0
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.6e-17 94.0 219 37.0
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 3.6e-17 92.8 213 36.6
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 6.2e-17 92.0 230 34.8
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 6.2e-17 92.0 215 36.3
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 8.1e-17 91.7 214 35.0
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 6.9e-16 88.6 218 35.3
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.2e-15 87.8 227 35.2
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.2e-15 87.8 211 37.4
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.2e-15 87.8 127 48.0
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 2.0e-15 87.0 214 32.7
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 9.9e-15 84.7 235 36.6
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 2.9e-14 83.2 224 34.4
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 2.9e-14 83.2 206 35.9
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 8.4e-14 81.6 202 35.6
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.4e-13 80.9 233 31.8
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.4e-13 80.1 211 33.6
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 3.2e-13 79.7 214 34.1
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 3.2e-13 79.7 210 37.6
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 7.1e-13 78.6 206 32.5
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.2e-12 77.8 213 36.6
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 1.6e-12 77.4 216 34.7
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.6e-12 77.4 193 35.8
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.7e-12 76.6 251 30.7
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 3.5e-12 76.3 85 52.9
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 3.5e-12 76.3 204 37.7
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 4.6e-12 75.9 205 33.2
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 7.9e-12 75.1 215 34.0
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.3e-11 73.6 206 32.5
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.3e-11 73.6 202 35.1
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.9e-11 72.8 210 31.4
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 3.9e-11 72.8 204 33.8
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 3.9e-11 72.8 217 35.0
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 8.7e-11 71.6 206 34.5
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 1.5e-10 70.9 205 32.2
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 1.5e-10 70.9 240 32.1
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 3.3e-10 69.7 204 32.8
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 3.3e-10 69.7 222 32.9
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 4.3e-10 69.3 204 35.3
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 5.6e-10 68.9 222 33.3
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 5.6e-10 68.9 205 31.2
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 5.6e-10 68.9 238 31.5
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 9.6e-10 68.2 209 32.1
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 2.1e-09 67.0 207 30.9
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.1e-09 67.0 249 28.9
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.8e-09 66.6 212 31.6
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.8e-09 66.6 212 31.6
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.7e-09 66.2 206 32.5
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 4.8e-09 65.9 205 30.7
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 4.8e-09 65.9 242 31.0
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 6.2e-09 65.5 223 30.5
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 6.2e-09 65.5 94 41.5
CDE02G1593 Ceratophyllum demersum HOM05D045424 ORTHO05D009350 4.0e-08 62.8 212 32.1
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 5.3e-08 62.4 204 30.9
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 1.2e-07 61.2 207 30.4
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.2e-07 61.2 116 40.5
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.5e-07 60.8 183 33.3
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 2.0e-07 60.5 75 53.3
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 2.6e-07 60.1 221 30.3
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 4.5e-07 59.3 43 72.1
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 5.8e-07 58.9 109 37.6
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 7.6e-07 58.5 209 31.1
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.3e-06 57.8 190 32.1
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.3e-06 57.8 210 28.6
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 2.2e-06 57.0 47 61.7
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 8.4e-06 55.1 200 28.0


User provided reference genes

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