Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.7e-239 830.5 412 100.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.2e-159 567.0 450 68.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 5.5e-149 531.6 447 65.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.2e-148 530.4 451 65.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 6.1e-140 501.5 441 63.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 4.4e-138 495.4 440 62.3
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.8e-137 492.7 443 61.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.3e-136 488.4 439 62.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.2e-135 487.3 440 61.1
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.2e-135 487.3 445 60.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.6e-135 486.1 439 62.0
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.7e-134 483.4 447 60.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.9e-133 479.9 442 59.3
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 5.5e-133 478.4 443 59.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.7e-132 475.3 444 58.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.7e-132 475.3 442 59.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 8.0e-132 474.6 467 57.8
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 8.0e-132 474.6 439 60.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.0e-131 474.2 444 58.3
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.0e-131 472.6 451 57.4
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 5.2e-131 471.9 441 58.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.8e-131 471.5 444 57.7
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 3.4e-130 469.2 444 59.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.2e-129 466.5 450 58.4
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 6.3e-129 464.9 446 57.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.3e-129 464.5 451 57.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.8e-128 463.4 438 59.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-128 463.4 421 61.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.4e-128 463.0 440 58.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.2e-127 460.7 449 57.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 4.5e-127 458.8 443 58.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-126 456.8 443 58.0
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.7e-126 456.8 440 58.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.2e-126 456.4 445 57.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.8e-126 455.7 437 57.0
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 6.5e-126 454.9 443 58.0
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 6.5e-126 454.9 445 57.3
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.5e-126 454.5 449 56.3
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.5e-125 453.8 447 55.9
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.5e-125 453.0 445 57.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.5e-125 453.0 445 57.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.2e-124 450.7 447 55.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.2e-124 450.7 418 59.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.6e-124 450.3 438 58.0
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.1e-124 449.9 444 57.0
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.7e-124 448.7 445 57.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 6.1e-124 448.4 440 57.0
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 6.1e-124 448.4 449 56.3
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.8e-123 446.8 436 57.1
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 4.0e-123 445.7 447 55.0
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 5.2e-123 445.3 470 54.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.8e-123 444.9 441 57.1
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 6.8e-123 444.9 446 55.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.8e-123 444.9 449 55.5
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 6.8e-123 444.9 437 57.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 8.8e-123 444.5 438 56.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 8.8e-123 444.5 439 56.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.6e-122 443.0 443 55.3
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.6e-122 443.0 441 56.5
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 2.6e-122 443.0 458 53.7
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 4.4e-122 442.2 446 54.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.7e-122 441.8 446 54.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 9.8e-122 441.0 450 54.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 9.8e-122 441.0 458 54.4
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 9.8e-122 441.0 438 55.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.8e-121 439.5 441 56.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.7e-121 439.1 450 55.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 3.7e-121 439.1 443 55.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.7e-121 439.1 454 54.6
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 4.9e-121 438.7 446 55.8
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 6.3e-121 438.3 450 55.1
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 8.3e-121 438.0 448 54.9
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.8e-120 436.8 446 54.3
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 3.1e-120 436.0 441 56.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 5.4e-120 435.3 441 56.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.4e-120 435.3 447 55.7
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 7.0e-120 434.9 447 55.0
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 7.0e-120 434.9 441 54.9
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 9.1e-120 434.5 448 55.6
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.7e-119 433.0 437 55.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.5e-119 432.6 448 55.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.5e-119 432.6 446 53.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 3.5e-119 432.6 441 56.0
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 4.5e-119 432.2 437 55.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 5.9e-119 431.8 448 55.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 5.9e-119 431.8 440 54.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 7.7e-119 431.4 455 54.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-118 429.9 447 54.8
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.0e-118 428.7 443 55.3
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.9e-117 426.8 438 56.4
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.3e-117 426.0 380 63.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.6e-117 425.2 445 54.2
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 7.2e-117 424.9 434 56.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.6e-116 422.5 441 54.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.0e-115 421.0 420 57.1
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 6.8e-115 418.3 437 53.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.4e-114 416.0 460 52.2
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 9.8e-114 414.5 442 53.4
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.7e-113 413.7 386 60.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.7e-113 413.7 434 52.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-112 411.0 466 51.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-111 407.5 442 52.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.6e-111 407.1 438 53.4
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.6e-111 407.1 433 54.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.6e-111 405.6 446 52.2
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-110 404.1 429 51.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.7e-110 403.7 447 52.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 6.6e-110 401.7 447 52.6
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 3.3e-109 399.4 447 51.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-107 394.0 424 53.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.2e-107 392.1 438 51.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-107 391.7 449 52.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.4e-106 389.0 444 51.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.5e-106 388.3 429 50.8
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.9e-105 385.6 426 52.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.6e-103 380.6 461 50.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.3e-102 376.7 426 51.9
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.8e-99 367.1 363 56.7
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.1e-99 366.3 387 54.5
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.5e-98 364.0 431 50.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.2e-97 360.1 402 52.2
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.9e-97 359.0 374 57.8
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 5.4e-96 355.5 447 46.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.7e-94 350.5 430 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 4.7e-92 342.4 439 46.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.2e-90 337.8 366 52.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.4e-90 336.3 423 48.9
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 6.4e-89 332.0 355 56.3
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.7e-87 326.6 431 44.5
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.0e-86 324.7 430 46.5
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.0e-82 310.5 337 52.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.8e-82 308.9 361 48.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.1e-71 273.9 434 40.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.8e-68 263.5 397 41.6
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.6e-61 239.2 258 52.3
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-55 219.9 255 51.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 3.7e-44 183.3 381 34.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.6e-31 141.4 114 58.8
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.7e-28 131.3 201 45.3
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 7.7e-26 122.5 117 59.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.1e-19 102.1 177 37.9
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.9e-18 96.3 110 52.7
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 4.2e-16 90.1 150 39.3
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-15 87.8 83 50.6
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 3.6e-15 87.0 77 54.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 3.4e-13 80.5 85 50.6
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.1e-11 75.5 109 46.8
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.4e-11 75.1 55 56.4
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-11 73.6 58 51.7
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-11 73.6 58 51.7
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.5e-10 70.5 88 45.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 7.7e-10 69.3 104 43.3
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 7.7e-10 69.3 102 38.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 4.7e-07 60.1 73 46.6


User provided reference genes

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