Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.3e-196 688.7 347 100.0
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 4.5e-160 568.2 348 82.2
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.9e-158 562.8 343 82.5
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.6e-157 559.7 324 84.3
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.5e-155 552.4 330 81.8
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 5.6e-155 551.2 326 83.7
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.6e-155 551.2 343 80.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 2.1e-154 549.3 347 80.4
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.1e-153 545.4 324 81.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 9.0e-153 543.9 332 81.9
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.6e-152 542.3 348 78.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.6e-152 542.3 343 78.7
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.4e-152 542.0 349 77.4
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.5e-152 541.6 347 79.0
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.6e-152 540.8 347 79.0
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.2e-151 539.3 342 79.8
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.9e-151 538.9 348 78.2
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.9e-151 538.9 322 80.7
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 2.9e-151 538.9 348 78.4
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 3.8e-151 538.5 362 74.9
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.8e-151 538.5 357 77.0
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 6.5e-151 537.7 349 76.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.1e-150 537.0 359 75.5
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.9e-150 536.2 360 75.3
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.9e-150 536.2 346 77.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.5e-150 535.8 330 79.4
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 4.2e-150 535.0 328 79.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 4.2e-150 535.0 331 79.2
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 4.2e-150 535.0 326 80.4
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.1e-149 532.7 350 78.0
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.7e-149 532.3 335 77.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.7e-149 532.3 326 80.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 3.5e-149 531.9 328 79.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 4.6e-149 531.6 327 79.5
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.6e-149 531.6 325 80.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.3e-148 529.3 327 79.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.0e-148 528.9 337 78.3
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.0e-148 528.9 320 80.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-147 526.9 327 78.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.1e-147 526.9 362 75.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.5e-147 526.6 327 79.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.5e-147 526.6 356 76.4
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.9e-147 526.2 291 86.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 5.7e-147 524.6 348 75.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.8e-146 522.3 325 78.2
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.8e-146 522.3 326 79.4
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 4.8e-146 521.5 323 78.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.4e-145 520.0 326 79.4
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.4e-145 520.0 323 80.2
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-145 519.6 326 79.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.4e-145 519.2 326 79.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.1e-145 518.8 348 74.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.1e-145 518.8 332 77.7
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 6.9e-145 517.7 326 79.1
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.5e-144 516.5 402 66.4
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.6e-144 515.8 324 78.1
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 5.9e-144 514.6 345 77.4
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 5.9e-144 514.6 348 75.3
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.0e-143 513.8 340 74.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.0e-143 513.8 306 81.7
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.3e-143 513.5 345 73.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-143 513.1 318 79.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.7e-143 513.1 348 74.7
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 2.2e-143 512.7 340 74.4
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.9e-143 512.3 338 75.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 5.0e-143 511.5 327 78.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.1e-142 510.4 348 74.7
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 7.2e-142 507.7 327 76.8
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 9.4e-142 507.3 302 80.1
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 6.1e-141 504.6 310 80.0
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.0e-140 503.8 328 76.2
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 8.8e-140 500.7 293 81.6
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 7.4e-139 497.7 291 81.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.3e-138 496.9 385 67.8
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.3e-138 496.9 343 74.3
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.3e-138 496.9 325 77.2
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.2e-138 496.1 324 75.9
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.2e-138 496.1 313 77.0
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.2e-138 496.1 348 71.0
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.7e-138 495.4 284 82.7
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.3e-138 494.6 333 73.6
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 8.2e-138 494.2 350 70.6
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.8e-137 493.0 310 78.7
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.4e-137 492.7 354 70.1
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.4e-137 492.7 354 70.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 5.3e-137 491.5 353 70.0
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 9.1e-137 490.7 337 73.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-136 490.3 324 73.5
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.5e-136 490.0 333 73.3
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.0e-136 489.6 337 72.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.3e-135 486.9 345 71.6
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 7.2e-134 481.1 287 80.5
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 9.4e-134 480.7 324 75.3
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.2e-133 480.3 334 71.6
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 4.7e-133 478.4 268 84.7
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 9.7e-131 470.7 272 82.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 6.3e-130 468.0 350 69.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.4e-129 466.1 270 82.6
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.4e-129 466.1 310 73.2
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.1e-129 465.7 347 68.6
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 5.3e-129 464.9 287 76.7
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.0e-128 463.0 338 67.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 8.0e-125 451.1 298 76.2
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.4e-123 445.3 341 66.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.3e-122 443.7 316 71.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 4.1e-121 438.7 301 74.1
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.0e-120 436.4 363 65.0
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.2e-118 429.1 289 78.9
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.8e-116 423.3 337 66.2
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.4e-115 419.1 318 68.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.1e-113 414.1 287 71.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.1e-113 412.5 281 69.4
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 5.3e-113 411.8 280 76.1
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 7.0e-113 411.4 290 69.3
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.3e-111 407.1 349 59.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.2e-110 402.5 291 70.1
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 9.5e-102 374.4 255 73.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 4.9e-98 362.1 304 64.5
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.3e-94 348.2 302 60.3
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.9e-89 333.6 228 72.8
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.1e-86 324.3 240 70.8
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.3e-82 310.8 226 72.1
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.8e-68 263.8 153 80.4
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.0e-64 248.8 139 84.2
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.3e-63 246.9 347 45.5
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.1e-57 228.0 183 65.0
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.4e-57 227.6 139 77.7
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 4.6e-56 222.6 132 77.3
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.0e-52 209.5 142 73.9
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 8.4e-50 201.8 108 84.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 4.6e-48 196.1 108 81.5
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 4.8e-37 159.5 129 58.9
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.4e-36 157.1 277 39.4
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.9e-36 155.6 112 67.0
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 3.5e-32 143.3 308 32.5
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-30 138.3 117 59.8
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.8e-29 133.7 188 44.7
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.0e-23 113.6 86 64.0
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.3e-22 109.8 87 59.8
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.7e-21 107.8 296 31.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.3e-18 98.2 71 64.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 3.8e-18 96.7 92 58.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 5.0e-18 96.3 93 59.1
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 8.5e-18 95.5 53 86.8
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 4.2e-17 93.2 52 82.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 4.7e-16 89.7 51 76.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 3.9e-15 86.7 53 77.4
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 2.0e-14 84.3 81 48.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.8e-10 70.1 37 81.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.0e-06 57.8 31 80.6


User provided reference genes

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