Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.5e-147 526.2 268 100.0
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 5.1e-103 378.3 267 70.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-101 373.2 268 70.1
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 2.1e-101 372.9 240 76.2
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.1e-100 370.5 245 75.1
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.0e-99 366.3 269 68.8
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 9.9e-99 364.0 247 74.5
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.7e-98 363.2 267 69.3
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.4e-97 359.4 243 73.7
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.4e-97 359.4 243 73.7
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.3e-95 353.6 258 68.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 3.9e-95 352.1 266 68.8
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 3.9e-95 352.1 247 70.4
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.5e-94 349.4 257 69.3
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.3e-94 349.0 242 70.2
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 7.3e-94 347.8 270 69.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.8e-93 345.9 247 68.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.8e-93 345.9 245 70.2
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 6.2e-93 344.7 268 67.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.8e-92 343.2 265 66.4
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.0e-91 339.7 245 68.6
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.0e-91 339.7 264 67.0
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 2.0e-91 339.7 242 70.2
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.6e-91 339.3 265 65.7
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.7e-90 336.7 263 63.5
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.7e-90 336.7 245 66.5
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.9e-90 335.9 267 65.9
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 8.4e-90 334.3 245 66.1
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 8.4e-90 334.3 245 66.1
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.2e-89 332.4 257 62.6
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.2e-89 332.0 259 61.0
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 5.4e-89 331.6 247 67.2
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.7e-88 329.3 257 63.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.7e-88 329.3 264 65.9
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 4.6e-88 328.6 265 63.4
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 7.8e-88 327.8 265 62.6
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.0e-87 327.4 243 67.1
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.7e-87 326.6 265 63.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.7e-87 326.6 263 63.9
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 4.3e-86 322.0 265 63.4
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 5.6e-86 321.6 242 65.3
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 5.6e-86 321.6 240 67.1
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.3e-85 320.5 263 63.9
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.1e-85 319.7 240 66.2
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 3.6e-85 318.9 240 67.5
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 6.2e-85 318.2 254 63.8
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.1e-84 317.4 265 60.8
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.4e-84 317.0 265 62.6
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.8e-84 316.6 240 66.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.8e-84 316.6 240 66.7
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 3.1e-84 315.8 240 66.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 3.1e-84 315.8 237 67.1
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 5.3e-84 315.1 240 66.2
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 5.3e-84 315.1 240 66.7
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 6.9e-84 314.7 237 65.8
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-83 313.9 264 63.6
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 2.0e-83 313.2 265 59.6
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.6e-83 312.8 270 61.1
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.6e-83 312.8 259 60.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.6e-83 312.8 259 64.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.4e-83 312.4 267 59.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 5.8e-83 311.6 267 61.8
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 9.9e-83 310.8 238 65.1
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.2e-82 309.7 240 66.2
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 2.2e-82 309.7 237 65.4
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.2e-82 309.7 269 61.0
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.2e-82 309.7 269 61.0
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 2.2e-82 309.7 263 62.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 2.2e-82 309.7 259 59.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.9e-82 309.3 251 61.0
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 3.8e-82 308.9 240 62.9
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.4e-82 308.1 248 61.7
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 6.4e-82 308.1 263 61.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 8.4e-82 307.8 259 61.8
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-81 307.0 268 60.1
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.4e-81 307.0 248 60.9
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 3.2e-81 305.8 245 61.6
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 3.2e-81 305.8 265 61.1
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 3.2e-81 305.8 270 60.4
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 4.2e-81 305.4 241 64.3
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 3.5e-80 302.4 229 67.2
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.0e-79 300.8 242 61.6
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 1.0e-79 300.8 246 64.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.3e-79 300.4 266 61.3
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 2.5e-78 296.2 246 63.0
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.6e-78 295.0 245 60.8
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.6e-78 295.0 265 61.1
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.3e-77 293.9 246 62.2
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.6e-77 293.5 251 62.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.8e-77 292.7 246 62.6
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 3.7e-77 292.4 257 58.4
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 6.2e-77 291.6 264 58.0
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.1e-76 289.3 247 59.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.0e-76 288.9 265 60.0
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.2e-75 287.3 251 57.4
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.0e-75 286.6 210 68.6
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.4e-75 285.8 242 61.6
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.3e-74 283.9 242 59.5
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.1e-73 280.8 272 56.6
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 2.5e-73 279.6 250 58.8
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 4.2e-73 278.9 248 59.7
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 3.5e-72 275.8 240 62.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 7.9e-72 274.6 244 58.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 3.0e-71 272.7 251 55.4
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.1e-68 262.7 263 56.7
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.5e-67 260.4 256 54.3
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 2.0e-67 260.0 239 58.6
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 3.4e-67 259.2 248 55.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.0e-66 257.7 257 51.4
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.4e-65 253.8 265 52.1
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-63 247.7 243 56.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 8.2e-61 238.0 214 58.9
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.0e-59 233.4 242 53.3
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.5e-59 232.3 207 58.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 4.5e-59 232.3 217 59.4
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.7e-59 231.5 223 57.8
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.6e-56 223.8 243 52.3
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.3e-55 219.9 241 50.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.4e-51 206.1 150 62.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.3e-50 204.1 245 46.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 8.5e-50 201.4 241 45.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.0e-39 167.9 137 57.7
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.3e-39 166.8 170 51.2
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.7e-37 160.6 213 41.3
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.3e-37 158.7 259 42.1
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 6.3e-37 158.7 133 59.4
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.0e-36 155.2 262 42.0
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.9e-35 152.1 159 48.4
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-33 147.9 173 45.7
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 9.4e-33 144.8 221 38.0
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.6e-32 144.1 231 34.2
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.0e-30 137.1 234 33.3
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 2.6e-30 136.7 244 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 3.4e-30 136.3 232 36.6
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 9.7e-30 134.8 230 33.0
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.2e-27 127.9 157 51.0
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 4.5e-19 99.4 80 57.5
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 4.0e-15 86.3 70 67.1
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 4.0e-15 86.3 70 67.1
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.8e-12 77.4 81 58.0
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 9.2e-12 75.1 186 29.6


User provided reference genes

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