Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 2067.0 1090 100.0
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1494.9 1093 72.6
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1484.9 1093 71.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1449.9 1090 66.7
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1422.5 1138 66.6
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1422.1 1094 69.8
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1406.0 1086 68.3
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1399.0 1089 67.7
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1398.6 1092 65.5
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1389.4 1092 67.7
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1389.4 1096 66.6
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1372.8 1090 68.4
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1364.0 1093 67.2
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1363.6 1095 67.0
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1362.4 1090 65.1
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1360.1 1098 65.2
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1352.4 1097 66.1
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1348.6 1093 66.6
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1332.0 1096 64.7
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1325.1 1112 63.8
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1323.5 1096 64.5
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1298.9 1096 63.1
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1294.6 973 67.2
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1285.0 1094 62.2
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1278.1 1096 61.6
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1276.5 1074 63.7
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1268.8 1096 60.8
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1267.3 1096 61.3
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1260.7 1086 62.3
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1258.0 1069 61.5
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1257.3 1094 61.6
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1255.7 1108 62.8
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1255.0 1097 60.4
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1254.6 1098 60.4
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1253.8 1093 60.3
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1251.1 1058 64.7
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1248.0 1096 60.8
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1245.3 1098 60.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1244.2 1098 59.8
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1241.5 1094 62.1
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1238.4 1095 59.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1233.0 1058 61.8
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1228.8 1087 59.1
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1224.2 1088 61.6
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1216.4 1090 60.2
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1211.1 1098 59.5
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1188.3 1094 59.8
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1187.6 1193 54.8
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1186.4 1071 61.4
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1177.5 1093 61.2
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1166.8 1101 59.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1149.8 1094 58.0
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1148.7 1090 58.3
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1145.2 1089 57.7
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1143.6 1090 57.8
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1141.3 1090 57.9
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1140.2 1093 59.0
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1140.2 1089 57.5
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 0.0e+00 1136.3 1090 58.3
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1133.6 1083 57.5
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1131.7 1098 58.5
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1129.4 1090 57.2
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 0.0e+00 1125.5 1090 56.0
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1123.6 1093 57.3
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1116.7 1065 59.3
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1115.1 1088 56.0
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1113.6 1090 56.5
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1111.3 1127 55.8
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1105.5 1110 56.0
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1102.0 1111 55.6
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1099.0 1092 57.7
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1098.2 1092 57.5
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 0.0e+00 1093.2 1167 53.7
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1085.1 1089 55.8
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1078.2 1010 55.5
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.4e-305 1053.1 1092 52.4
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.1e-301 1039.3 1085 51.1
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 5.8e-299 1031.2 1034 56.6
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 3.4e-291 1005.4 1091 52.2
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 4.2e-289 998.4 1099 50.9
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.2e-277 959.5 1103 52.5
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.6e-275 953.4 1107 51.4
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.5e-225 787.3 1110 43.4
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 9.5e-225 784.6 642 62.6
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.9e-220 770.4 613 65.4
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 5.4e-220 768.8 719 57.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-214 751.1 1109 40.7
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-214 751.1 1109 40.7
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.3e-201 706.4 1135 39.5
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.9e-193 680.6 630 59.7
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 2.4e-183 647.1 1002 37.9
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 8.7e-178 628.6 500 62.0
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.1e-175 620.2 1064 35.3
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 9.4e-148 528.9 435 60.9
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.4e-130 471.9 429 57.1
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 7.1e-111 406.4 827 30.7
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.0e-109 401.0 470 46.0
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.4e-106 392.1 436 54.8
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 4.9e-96 357.1 445 51.7
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 3.1e-90 337.8 369 50.9
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.5e-81 308.9 335 52.2
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.6e-78 298.9 219 63.5
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 2.7e-78 298.1 406 47.3
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 2.7e-78 298.1 285 54.4
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.0e-69 268.1 461 34.9
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 5.9e-65 253.8 957 26.3
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 8.8e-61 240.0 813 27.2
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.9e-56 224.9 656 27.7
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.2e-41 176.4 161 55.3
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.8e-35 154.5 87 80.5
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.1e-34 153.3 251 39.0
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.0e-33 149.1 138 58.0
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.5e-31 142.1 102 69.6
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 7.2e-31 140.6 159 46.5
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 2.7e-30 138.7 160 65.0
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 4.4e-28 131.3 189 43.4
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.7e-27 128.3 90 68.9
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.7e-27 128.3 122 51.6
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 9.1e-26 123.6 119 50.4
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.2e-25 123.2 215 52.6
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 4.2e-23 114.8 141 46.8
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.2e-23 114.0 104 51.9
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 5.7e-20 104.4 114 47.4
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.2e-19 102.4 111 50.5
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 3.7e-19 101.7 134 47.8
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.8e-18 99.4 98 48.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 1.8e-18 99.4 132 37.9
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 3.1e-18 98.6 180 50.0
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-17 96.3 88 52.3
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 8.6e-16 90.5 665 23.5
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 8.6e-16 90.5 132 34.8
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 9.5e-15 87.0 649 23.1
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 1.6e-14 86.3 671 22.7
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.1e-14 85.9 676 22.5
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 2.1e-14 85.9 87 50.6
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 4.7e-14 84.7 87 49.4
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 8.0e-14 84.0 651 23.0
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 1.5e-12 79.7 648 22.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 8.3e-11 73.9 48 64.6
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.4e-10 73.2 65 56.9
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.4e-10 73.2 543 21.7
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.2e-09 70.1 672 21.7
Actinidia31594 Actinidia chinensis HOM05D005298 ORTHO05D026321 2.3e-08 65.9 108 39.8
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 1.5e-07 63.2 62 53.2
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 3.3e-07 62.0 62 48.4


User provided reference genes

Program Settings