Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G002400 Manihot esculenta HOM05D008159 ORTHO05D009498 2.1e-36 155.2 82 100.0
Thecc.04G305200 Theobroma cacao HOM05D008159 ORTHO05D009498 3.4e-26 121.3 83 78.3
Duzib052G0731 Durio zibethinus HOM05D008159 ORTHO05D009498 1.5e-21 105.9 83 67.5
Potri.010G148300 Populus trichocarpa HOM05D008159 ORTHO05D009498 2.5e-21 105.1 79 73.4
Ciclev10006357m.g Citrus clementina HOM05D008159 ORTHO05D009498 3.7e-20 101.3 82 67.1
CiPaw.01G135400 Carya illinoinensis HOM05D008159 ORTHO05D009498 6.2e-20 100.5 85 67.1
Cc03_g00570 Coffea canephora HOM05D008159 ORTHO05D009498 5.3e-19 97.4 77 62.3
Eucgr.H04070 Eucalyptus grandis HOM05D008159 ORTHO05D009498 2.6e-18 95.1 79 72.2
Potri.008G102400 Populus trichocarpa HOM05D008159 ORTHO05D009498 1.3e-17 92.8 76 64.5
Atru.chr4.3059 Acer truncatum HOM05D008159 ORTHO05D009498 2.5e-16 88.6 85 64.7
TAR365G1059 Trochodendron aralioides HOM05D001895 ORTHO05D002082 7.1e-16 87.0 85 61.2
RcHm_v2.0_Chr4g0425921 Rosa chinensis HOM05D008159 ORTHO05D009498 9.3e-16 86.7 85 58.8
Gorai.006G080300 Gossypium raimondii HOM05D008159 ORTHO05D009498 3.5e-15 84.7 85 55.3
FvH4_4g20450 Fragaria vesca HOM05D008159 ORTHO05D009498 6.0e-15 84.0 85 57.6
FAN12G1128 Fragaria x ananassa HOM05D008159 ORTHO05D009498 6.0e-15 84.0 85 57.6
vmacro07951 Vaccinium macrocarpon HOM05D008159 ORTHO05D009498 7.9e-15 83.6 98 52.0
MD13G1149600 Malus domestica HOM05D008159 ORTHO05D009498 1.0e-14 83.2 95 52.6
FAN07G1405 Fragaria x ananassa HOM05D008159 ORTHO05D009498 1.3e-14 82.8 85 56.5
Gohir.D09G065600 Gossypium hirsutum HOM05D008159 ORTHO05D009498 1.1e-13 79.7 85 54.1
MD16G1149900 Malus domestica HOM05D008159 ORTHO05D009498 1.1e-13 79.7 90 53.3
Glyma.15G138300 Glycine max HOM05D008159 ORTHO05D009498 1.9e-13 79.0 79 45.6
Rhsim04G0241600 Rhododendron simsii HOM05D008159 ORTHO05D009498 5.7e-13 77.4 91 52.7
Eucgr.B03969 Eucalyptus grandis HOM05D008159 ORTHO05D009498 9.6e-13 76.6 75 54.7
Eucgr.H03298 Eucalyptus grandis HOM05D008159 ORTHO05D009498 1.6e-12 75.9 95 48.4
Cc02_g35240 Coffea canephora HOM05D008159 ORTHO05D009498 2.1e-12 75.5 90 47.8
Prupe.1G113600 Prunus persica HOM05D008159 ORTHO05D009498 8.2e-12 73.6 55 69.1
Lj6g0007339 Lotus japonicus HOM05D008159 ORTHO05D009498 2.4e-11 72.0 80 55.0
Migut.G00043 Erythranthe guttata HOM05D065555 ORTHO05D009498 6.9e-11 70.5 78 57.7
Haze_01341 Corylus avellana HOM05D008159 ORTHO05D009498 4.5e-10 67.8 68 50.0
Haze_01342 Corylus avellana HOM05D008159 ORTHO05D009498 4.5e-10 67.8 68 50.0
Oeu053734.1 Olea europaea HOM05D008159 ORTHO05D009498 1.0e-09 66.6 105 41.9
Migut.N00944 Erythranthe guttata HOM05D008159 ORTHO05D009498 2.9e-09 65.1 99 43.4
Migut.B00941 Erythranthe guttata HOM05D008159 ORTHO05D009498 3.8e-09 64.7 87 43.7
EL10Ac3g05544 Beta vulgaris HOM05D008159 ORTHO05D009498 5.0e-09 64.3 85 37.6
DCAR_005440 Daucus carota HOM05D008159 ORTHO05D009498 5.0e-09 64.3 82 41.5
Phvul.006G119900 Phaseolus vulgaris HOM05D000949 ORTHO05D009565 5.0e-09 64.3 75 54.7
Medtr2g033600 Medicago truncatula HOM05D008159 ORTHO05D009498 6.5e-09 63.9 86 48.8
CSS0042580 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D009565 1.1e-08 63.2 58 53.4
TAR636G1322 Trochodendron aralioides HOM05D008159 ORTHO05D009498 1.1e-08 63.2 79 53.2
TAR636G3676 Trochodendron aralioides HOM05D008159 ORTHO05D009498 1.1e-08 63.2 79 53.2
Lalb_Chr21g0310201 Lupinus albus HOM05D008159 ORTHO05D009498 1.9e-08 62.4 81 44.4
PGSC0003DMG402002794 Solanum tuberosum HOM05D008159 ORTHO05D009498 1.9e-08 62.4 98 37.8
Manes.09G177901 Manihot esculenta HOM05D008159 ORTHO05D009498 4.2e-08 61.2 80 47.5
Gohir.A10G174300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 5.5e-08 60.8 33 78.8
Gohir.D10G180800 Gossypium hirsutum HOM05D008159 ORTHO05D009498 5.5e-08 60.8 33 78.8
TPR.G17642 Trifolium pratense HOM05D008159 ORTHO05D009498 5.5e-08 60.8 75 52.0
THA.LOC109116907 Tarenaya hassleriana HOM05D008159 ORTHO05D009498 9.3e-08 60.1 73 52.1
Lalb_Chr06g0167441 Lupinus albus HOM05D008159 ORTHO05D009498 1.6e-07 59.3 81 39.5
Lalb_Chr20g0120721 Lupinus albus HOM05D008159 ORTHO05D009498 2.1e-07 58.9 74 44.6
Cfa006721 Carpinus fangiana HOM05D008159 ORTHO05D009498 4.6e-07 57.8 81 39.5
CiPaw.07G030900 Carya illinoinensis HOM05D008159 ORTHO05D009498 6.1e-07 57.4 88 39.8
Phvul.007G202400 Phaseolus vulgaris HOM05D008159 ORTHO05D009498 6.1e-07 57.4 55 54.5
Glyma.09G033500 Glycine max HOM05D008159 ORTHO05D009498 7.9e-07 57.0 74 39.2
Ciclev10003072m.g Citrus clementina HOM05D009594 ORTHO05D009498 1.0e-06 56.6 80 45.0
Aa31LG11G9850 Aethionema arabicum HOM05D009594 ORTHO05D009498 2.3e-06 55.5 54 50.0
CARHR287950 Cardamine hirsuta HOM05D008159 ORTHO05D009498 2.3e-06 55.5 74 40.5
Gohir.A11G274300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 2.3e-06 55.5 83 42.2
Gohir.D11G284500 Gossypium hirsutum HOM05D008159 ORTHO05D009498 2.3e-06 55.5 83 42.2
Gorai.007G307600 Gossypium raimondii HOM05D008159 ORTHO05D009498 2.3e-06 55.5 83 42.2
A06p38300 Brassica napus HOM05D008159 ORTHO05D009498 3.0e-06 55.1 74 41.9
C07p39940 Brassica napus HOM05D008159 ORTHO05D009498 3.0e-06 55.1 74 41.9
BolC7t44526H Brassica oleracea HOM05D008159 ORTHO05D009498 3.0e-06 55.1 74 41.9
BraA06t26745Z Brassica rapa HOM05D008159 ORTHO05D009498 3.0e-06 55.1 74 41.9
Carub.0008s0940 Capsella rubella HOM05D008159 ORTHO05D009498 3.0e-06 55.1 76 39.5
Carub.0006s2444 Capsella rubella HOM05D009594 ORTHO05D009498 3.9e-06 54.7 45 55.6
CARHR186770 Cardamine hirsuta HOM05D009594 ORTHO05D009498 3.9e-06 54.7 45 57.8
THA.LOC109117014 Tarenaya hassleriana HOM05D009594 ORTHO05D009498 3.9e-06 54.7 45 53.3
AT5G49525 Arabidopsis thaliana HOM05D008159 ORTHO05D009498 6.7e-06 53.9 76 40.8
Thhalv10005279m.g Eutrema salsugineum HOM05D009594 ORTHO05D009498 6.7e-06 53.9 51 54.9
Potri.005G011400 Populus trichocarpa HOM05D009594 ORTHO05D009498 6.7e-06 53.9 42 69.0
Sp2g19830 Schrenkiella parvula HOM05D008159 ORTHO05D009498 6.7e-06 53.9 74 39.2
SpUn0021_0020 Schrenkiella parvula HOM05D008159 ORTHO05D009498 6.7e-06 53.9 74 39.2
Ah.06g196160 Amaranthus hybridus HOM05D009594 ORTHO05D009498 8.7e-06 53.5 84 44.0
Cpa.g.sc48.176 Carica papaya HOM05D009594 ORTHO05D009498 8.7e-06 53.5 80 43.8


User provided reference genes

Program Settings