Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G001100 Manihot esculenta HOM05D007925 ORTHO05D009727 1.1e-108 396.7 217 100.0
Potri.012G102300 Populus trichocarpa HOM05D007925 ORTHO05D009727 1.1e-39 167.5 231 48.5
Dinv44272 Davidia involucrata HOM05D007925 ORTHO05D009727 2.3e-37 159.8 228 48.2
Manes.03G206101 Manihot esculenta HOM05D007925 ORTHO05D009727 4.3e-36 155.6 225 48.4
Potri.008G103600 Populus trichocarpa HOM05D007925 ORTHO05D009727 5.8e-33 145.2 240 43.8
QL12p029416 Quercus lobata HOM05D007925 ORTHO05D009727 2.9e-32 142.9 221 39.8
Atru.chr4.3043 Acer truncatum HOM05D007925 ORTHO05D009727 3.9e-29 132.5 225 43.6
Ciclev10005876m.g Citrus clementina HOM05D007925 ORTHO05D009727 5.1e-29 132.1 228 39.9
Cfa015292 Carpinus fangiana HOM05D007925 ORTHO05D009727 9.6e-28 127.9 216 40.7
Haze_01318 Corylus avellana HOM05D007925 ORTHO05D009727 9.6e-28 127.9 216 40.3
CiPaw.02G073300 Carya illinoinensis HOM05D007925 ORTHO05D009727 1.6e-27 127.1 223 39.5
Sabra12G0074900 Salix brachista HOM05D007925 ORTHO05D009727 2.8e-27 126.3 230 40.4
Thecc.04G303500 Theobroma cacao HOM05D007925 ORTHO05D009727 1.8e-26 123.6 219 41.6
TWI09G1395 Tripterygium wilfordii HOM05D007925 ORTHO05D009727 4.1e-26 122.5 209 44.0
Actinidia18460 Actinidia chinensis HOM05D007925 ORTHO05D009727 5.3e-26 122.1 213 39.9
Haze_01320 Corylus avellana HOM05D007925 ORTHO05D009727 2.2e-24 116.7 175 42.3
Gohir.A02G055200 Gossypium hirsutum HOM05D007925 ORTHO05D009727 2.9e-24 116.3 227 39.6
Gohir.D02G060200 Gossypium hirsutum HOM05D007925 ORTHO05D009727 2.9e-24 116.3 227 39.2
TWI53G0957 Tripterygium wilfordii HOM05D007925 ORTHO05D009727 5.0e-24 115.5 225 40.4
Prupe.1G115200 Prunus persica HOM05D007925 ORTHO05D009727 8.5e-24 114.8 221 37.1
Gorai.005G067800 Gossypium raimondii HOM05D007925 ORTHO05D009727 1.1e-23 114.4 227 38.8
RcHm_v2.0_Chr4g0425771 Rosa chinensis HOM05D007925 ORTHO05D009727 5.5e-23 112.1 233 36.5
AUR62039262 Chenopodium quinoa HOM05D007925 ORTHO05D009727 3.6e-22 109.4 216 38.9
FvH4_4g20350 Fragaria vesca HOM05D007925 ORTHO05D009727 4.6e-22 109.0 218 35.3
Rhsim04G0240400 Rhododendron simsii HOM05D007925 ORTHO05D009727 6.1e-22 108.6 230 37.0
ClCG06G004510 Citrullus lanatus HOM05D007925 ORTHO05D009727 3.3e-20 102.8 223 33.2
FvH4_4g20280 Fragaria vesca HOM05D007925 ORTHO05D009727 4.3e-20 102.4 218 34.4
TAR633G0906 Trochodendron aralioides HOM05D007925 ORTHO05D009727 7.4e-20 101.7 204 38.2
Sed0014435 Sechium edule HOM05D007925 ORTHO05D009727 6.3e-19 98.6 222 32.4
Ah.13g071370 Amaranthus hybridus HOM05D007925 ORTHO05D009727 1.4e-18 97.4 212 35.8
CsaV3_6G028540 Cucumis sativus L. HOM05D007925 ORTHO05D009727 1.5e-17 94.0 222 32.0
AUR62016227 Chenopodium quinoa HOM05D007925 ORTHO05D009727 1.3e-16 90.9 182 39.0
FAN07G0172 Fragaria x ananassa HOM05D007925 ORTHO05D009727 1.4e-15 87.4 140 39.3
COL.COLO4_34592 Corchorus olitorius HOM05D007925 ORTHO05D009727 1.9e-15 87.0 206 36.4
Solyc03g093980.2 Solanum lycopersicum HOM05D007925 ORTHO05D009727 1.9e-15 87.0 232 37.1
FvH4_4g20060 Fragaria vesca HOM05D007925 ORTHO05D009727 3.2e-15 86.3 165 36.4
Sopen03g024830 Solanum pennellii HOM05D007925 ORTHO05D009727 3.2e-15 86.3 232 37.1
MD16G1151500 Malus domestica HOM05D007925 ORTHO05D009727 9.4e-15 84.7 143 39.2
Nitab4.5_0007718g0010 Nicotiana tabacum HOM05D007925 ORTHO05D009727 9.4e-15 84.7 234 35.0
Nitab4.5_0009429g0010 Nicotiana tabacum HOM05D007925 ORTHO05D009727 9.4e-15 84.7 232 35.8
Potri.010G147301 Populus trichocarpa HOM05D007925 ORTHO05D009727 1.8e-13 80.5 160 38.8
FAN12G1072 Fragaria x ananassa HOM05D007925 ORTHO05D009727 2.0e-12 77.0 140 38.6
Oeu042669.1 Olea europaea HOM05D007925 ORTHO05D009727 2.0e-12 77.0 236 33.1
Phvul.006G118800 Phaseolus vulgaris HOM05D007925 ORTHO05D009727 2.0e-12 77.0 231 32.5
MELO3C021261.2 Cucumis melo HOM05D007925 ORTHO05D009727 5.7e-12 75.5 214 28.5
Nn4g25550 Nelumbo nucifera HOM05D007925 ORTHO05D009727 7.4e-12 75.1 252 30.2
Glyma.09G034600 Glycine max HOM05D007925 ORTHO05D009727 1.3e-11 74.3 226 31.9
Migut.B00760 Erythranthe guttata HOM05D007925 ORTHO05D009727 2.8e-11 73.2 228 29.8
Cpa.g.sc9.40 Carica papaya HOM05D007925 ORTHO05D009727 8.2e-11 71.6 212 35.4
Oeu063653.1 Olea europaea HOM05D007925 ORTHO05D009727 1.1e-10 71.2 237 33.8
VMungo0540G0187 Vigna mungo HOM05D007925 ORTHO05D009727 1.4e-10 70.9 236 32.6
PGSC0003DMG400008341 Solanum tuberosum HOM05D007925 ORTHO05D009727 2.4e-10 70.1 204 32.4
Glyma.15G139300 Glycine max HOM05D007925 ORTHO05D009727 4.1e-10 69.3 225 29.3
SHI00122 Sapria himalayana HOM05D007925 ORTHO05D009727 9.1e-10 68.2 92 46.7
Lsat_1_v5_gn_6_39741 Lactuca sativa HOM05D007925 ORTHO05D009727 1.2e-09 67.8 136 34.6
MD13G1151000 Malus domestica HOM05D007925 ORTHO05D009727 1.0e-08 64.7 143 33.6
Sc13g0006560 Simmondsia chinensis HOM05D007925 ORTHO05D009727 1.3e-08 64.3 139 34.5
ECA233G1514 Erigeron canadensis HOM05D007925 ORTHO05D009727 1.9e-07 60.5 259 29.0
arahy.Tifrunner.gnm1.ann1.8N1160 Arachis hypogaea HOM05D007925 ORTHO05D009727 2.5e-07 60.1 200 29.0
arahy.Tifrunner.gnm1.ann1.BW1DTW Arachis hypogaea HOM05D007925 ORTHO05D009727 2.5e-07 60.1 192 28.1
ECA234G4268 Erigeron canadensis HOM05D007925 ORTHO05D009727 2.5e-07 60.1 160 31.2
Peaxi162Scf00935g00005 Petunia axillaris HOM05D007925 ORTHO05D009727 7.2e-07 58.5 146 34.2


User provided reference genes

Program Settings