Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.8e-60 234.6 114 100.0
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 4.6e-45 184.5 144 68.8
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 4.6e-45 184.5 146 67.8
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 7.1e-38 160.6 87 86.2
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 3.1e-33 145.2 81 81.5
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 4.0e-33 144.8 80 83.8
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.2e-33 144.4 86 75.6
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 6.8e-33 144.1 81 80.2
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 6.8e-33 144.1 86 74.4
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 6.8e-33 144.1 81 80.2
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 6.8e-33 144.1 93 71.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.5e-32 142.9 81 80.2
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 2.6e-32 142.1 83 78.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 4.4e-32 141.4 83 78.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 9.9e-32 140.2 78 82.1
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.9e-32 140.2 81 79.0
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.9e-32 140.2 81 79.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.9e-31 138.7 81 77.8
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.9e-31 138.7 81 77.8
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 6.4e-31 137.5 81 79.0
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 8.4e-31 137.1 78 75.6
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.4e-30 135.6 78 80.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.4e-30 135.6 78 74.4
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.2e-30 135.2 78 79.5
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 4.1e-30 134.8 81 76.5
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 5.4e-30 134.4 85 74.1
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 7.1e-30 134.0 81 76.5
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 9.2e-30 133.7 78 76.9
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 9.2e-30 133.7 78 78.2
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.2e-29 133.3 78 79.5
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.6e-29 132.9 78 75.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 1.6e-29 132.9 80 76.2
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.7e-29 132.1 77 79.2
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 3.5e-29 131.7 83 74.7
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.0e-28 130.2 78 78.2
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.3e-28 129.0 80 73.8
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.3e-28 129.0 78 74.4
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 3.0e-28 128.6 85 67.1
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 3.0e-28 128.6 83 65.1
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.9e-28 128.3 83 69.9
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.9e-28 128.3 83 69.9
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 3.9e-28 128.3 111 57.7
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 5.1e-28 127.9 81 71.6
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 5.1e-28 127.9 83 68.7
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 5.1e-28 127.9 83 68.7
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 6.6e-28 127.5 84 67.9
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 6.6e-28 127.5 80 73.8
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 8.6e-28 127.1 78 73.1
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 8.6e-28 127.1 78 73.1
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.1e-27 126.7 83 66.3
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.1e-27 126.7 78 73.1
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 1.5e-27 126.3 83 68.7
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.5e-27 126.3 96 61.5
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.9e-27 125.9 83 68.7
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.5e-27 125.6 94 64.9
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.5e-27 125.6 90 61.1
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 3.3e-27 125.2 78 74.4
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.3e-27 124.8 95 67.4
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.3e-27 124.8 84 67.9
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 4.3e-27 124.8 78 70.5
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 5.6e-27 124.4 83 66.3
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 5.6e-27 124.4 79 72.2
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 7.3e-27 124.0 78 73.1
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 7.3e-27 124.0 76 75.0
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.2e-26 123.2 76 75.0
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.2e-26 123.2 83 65.1
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.2e-26 123.2 76 75.0
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.2e-26 123.2 85 64.7
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.6e-26 122.9 79 69.6
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.1e-26 122.5 80 72.5
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.1e-26 122.5 78 69.2
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.1e-26 122.5 72 77.8
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.8e-26 122.1 78 73.1
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 2.8e-26 122.1 86 73.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 3.6e-26 121.7 78 69.2
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 3.6e-26 121.7 78 69.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.7e-26 121.3 74 75.7
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 6.2e-26 120.9 78 71.8
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 6.2e-26 120.9 77 71.4
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 6.2e-26 120.9 77 71.4
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 8.1e-26 120.6 77 71.4
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 8.1e-26 120.6 77 71.4
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.1e-25 120.2 78 67.9
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.1e-25 120.2 77 71.4
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.4e-25 119.8 80 66.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 4.0e-25 118.2 80 72.5
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 4.0e-25 118.2 71 76.1
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 5.2e-25 117.9 78 67.9
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 5.2e-25 117.9 82 69.5
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.2e-24 116.7 80 71.2
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.5e-24 116.3 84 69.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 2.0e-24 115.9 80 71.2
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 2.0e-24 115.9 80 71.2
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.6e-24 115.5 83 59.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 3.4e-24 115.2 86 66.3
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 5.8e-24 114.4 80 71.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 7.6e-24 114.0 81 60.5
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 9.9e-24 113.6 78 67.9
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.7e-23 112.8 85 61.2
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.7e-23 112.8 86 61.6
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 2.2e-23 112.5 86 64.0
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.8e-23 111.7 86 60.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 4.9e-23 111.3 86 62.8
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.9e-22 109.4 80 68.8
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.9e-22 109.4 84 61.9
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.9e-22 109.4 82 59.8
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.4e-22 109.0 77 61.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.4e-22 109.0 84 66.7
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.2e-22 108.6 80 60.0
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 5.4e-22 107.8 82 61.0
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.1e-22 107.5 68 69.1
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 9.3e-22 107.1 80 63.8
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.2e-21 106.7 89 59.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.6e-21 106.3 76 61.8
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.7e-21 105.5 77 61.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.7e-21 105.5 66 69.7
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.7e-21 105.5 66 69.7
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.7e-21 105.5 79 57.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.7e-21 105.5 80 63.8
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 2.7e-21 105.5 82 54.9
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.5e-21 105.1 82 61.0
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 7.8e-21 104.0 78 56.4
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 7.8e-21 104.0 83 54.2
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.3e-20 103.2 80 62.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 3.0e-20 102.1 106 47.2
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 6.6e-20 100.9 82 53.7
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.7e-20 100.5 79 62.0
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 3.3e-19 98.6 77 57.1
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 4.3e-19 98.2 82 52.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 4.8e-18 94.7 68 58.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.2e-18 94.4 86 50.0
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 6.2e-18 94.4 62 69.4
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 9.0e-17 90.5 73 63.0
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 9.0e-17 90.5 73 63.0
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 9.9e-16 87.0 94 42.6
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.7e-15 86.3 62 62.9
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.7e-15 86.3 62 66.1
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.2e-15 85.9 91 48.4
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.2e-14 82.0 102 43.1
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.2e-13 80.1 73 53.4
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.6e-13 78.2 93 44.1
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.6e-13 78.2 93 44.1
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.6e-10 69.7 82 48.8
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.8e-08 61.2 75 46.7
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.1e-06 57.0 43 55.8
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 7.1e-06 54.3 34 73.5


User provided reference genes

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