Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 0.0e+00 1880.9 915 100.0
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 0.0e+00 1230.7 910 65.7
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 0.0e+00 1216.8 910 64.7
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 3.1e-309 1065.1 942 58.9
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.3e-307 1059.7 911 58.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 3.8e-307 1058.1 925 58.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.2e-305 1053.1 929 59.1
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.0e-304 1050.0 930 58.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 6.2e-302 1040.8 911 57.6
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.0e-300 1035.8 933 58.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 6.4e-299 1030.8 906 58.1
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.4e-298 1029.6 925 58.4
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.1e-293 1011.9 911 58.1
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 9.9e-292 1006.9 929 55.9
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.1e-290 1003.4 918 54.9
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 9.3e-290 1000.3 918 54.7
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.0e-288 995.3 918 55.0
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 3.0e-288 995.3 924 55.1
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.4e-285 986.5 918 54.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 5.1e-280 968.0 926 56.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-279 966.8 904 55.9
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.2e-276 956.8 922 52.7
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.9e-263 912.9 876 53.7
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.0e-259 900.6 918 55.6
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.2e-259 899.4 911 52.8
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.1e-258 897.1 917 50.8
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.4e-258 896.7 891 53.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 9.4e-258 894.0 711 60.8
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 4.5e-252 875.2 920 51.6
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.8e-251 872.1 917 49.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 5.0e-251 871.7 917 51.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 6.5e-251 871.3 923 51.2
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.2e-249 867.1 933 50.4
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 8.8e-248 860.9 917 49.4
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 4.5e-244 848.6 821 53.1
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 5.9e-244 848.2 919 49.9
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 6.5e-243 844.7 918 50.0
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.6e-241 839.0 919 49.7
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 6.1e-241 838.2 903 49.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 8.0e-241 837.8 907 50.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.8e-240 836.6 910 50.1
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 6.3e-238 828.2 921 48.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.4e-237 826.2 901 49.4
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 5.3e-237 825.1 918 49.7
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.2e-236 823.9 891 51.3
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 6.8e-232 808.1 919 47.8
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.6e-228 797.0 948 46.5
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.6e-225 786.9 775 52.4
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.4e-223 778.9 930 47.3
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.9e-218 763.5 921 43.3
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 7.3e-218 761.5 911 46.2
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.4e-215 752.7 743 55.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.3e-214 750.7 814 48.8
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 5.8e-207 725.3 885 46.4
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.7e-206 722.6 785 48.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.9e-205 720.3 897 45.2
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 2.3e-203 713.4 926 43.2
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 8.6e-203 711.4 903 45.5
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.3e-200 703.4 910 43.1
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.5e-199 700.7 918 42.3
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 2.9e-198 696.4 903 44.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.1e-197 694.5 919 44.3
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 9.2e-197 691.4 918 43.5
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 4.6e-196 689.1 961 42.5
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 8.1e-193 678.3 923 41.4
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.1e-189 666.0 900 42.3
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 6.0e-188 662.1 915 41.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.3e-187 661.0 886 43.5
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.1e-187 659.1 932 41.4
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 5.2e-184 649.0 921 42.7
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.8e-183 645.6 940 40.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.7e-182 644.0 919 40.5
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 4.9e-182 642.5 912 41.8
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.9e-181 640.6 930 41.4
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 5.1e-179 632.5 957 39.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 2.8e-177 626.7 896 42.5
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.8e-176 624.0 884 42.2
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 9.9e-175 618.2 897 41.8
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 8.4e-174 615.1 897 41.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 3.2e-173 613.2 936 41.1
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 8.1e-169 598.6 807 45.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.8e-168 597.4 944 37.4
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 9.0e-168 595.1 945 40.2
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 7.6e-167 592.0 772 43.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 8.4e-166 588.6 945 39.9
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 2.5e-162 577.0 661 48.3
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.3e-162 576.6 922 37.9
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 9.6e-162 575.1 918 39.1
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 2.8e-161 573.5 924 39.2
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 6.2e-161 572.4 934 39.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.1e-160 570.1 904 40.3
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.1e-152 545.0 969 37.9
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-151 541.2 883 39.9
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.0e-150 538.5 580 48.4
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.0e-142 511.9 931 36.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.7e-137 493.4 922 36.3
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.8e-136 491.1 415 56.9
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 4.2e-125 453.4 917 33.2
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-113 415.2 954 31.9
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 2.4e-112 411.0 691 39.1
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.7e-110 404.8 538 42.6
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.5e-109 401.7 401 51.9
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.0e-107 393.7 953 33.1
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.9e-103 379.8 667 34.9
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.5e-98 365.2 955 30.7
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.8e-92 344.4 957 30.4
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 7.8e-87 326.2 476 40.3
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 3.4e-82 310.8 525 36.2
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 4.4e-82 310.5 942 28.8
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.0e-79 300.1 655 32.1
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 2.1e-76 291.6 353 46.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.1e-76 291.6 505 35.4
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.0e-71 273.5 312 50.6
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-70 271.9 786 29.3
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 5.3e-67 260.4 558 33.5
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.4e-66 257.7 201 63.2
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.5e-61 242.3 399 34.8
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 9.6e-61 239.6 399 34.3
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 2.8e-60 238.0 289 48.1
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.1e-60 236.5 456 35.1
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-56 225.3 449 34.3
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.2e-55 222.6 180 58.3
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.5e-53 214.9 482 32.6
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.1e-51 208.0 759 27.3
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-48 198.7 434 31.8
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 5.1e-46 190.7 339 33.9
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-45 189.5 524 29.4
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 4.3e-45 187.6 251 45.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.9e-37 162.2 297 33.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.9e-37 162.2 297 33.0
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-34 152.9 386 30.6
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.5e-34 151.0 212 37.7
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-31 141.0 386 29.0
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 7.4e-29 133.7 114 53.5
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 9.1e-27 126.7 622 23.5
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.5e-26 125.9 712 23.5
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 3.3e-21 108.2 139 39.6
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-20 105.9 152 40.8
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 2.8e-20 105.1 190 43.2
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.1e-19 101.7 315 27.0
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 7.0e-19 100.5 509 23.6
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 9.1e-19 100.1 1053 21.5
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.6e-18 98.6 600 24.5
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 2.2e-17 95.5 413 24.9
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.9e-14 84.7 188 31.4
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 6.7e-14 84.0 107 47.7
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 8.2e-12 77.0 122 36.1
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 4.1e-11 74.7 151 36.4
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 1.2e-10 73.2 149 35.6
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-09 69.7 218 27.1
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 7.2e-08 63.9 65 44.6
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 9.4e-08 63.5 79 40.5
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 6.1e-07 60.8 190 26.8
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.0e-06 60.1 244 29.1
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 5.2e-06 57.8 60 46.7


User provided reference genes

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