Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 8.7e-254 879.8 434 100.0
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 3.2e-200 701.8 429 78.3
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.7e-199 698.0 429 77.6
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.8e-195 686.0 432 76.6
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.0e-194 682.6 429 76.7
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.7e-193 679.5 432 76.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 8.8e-190 667.2 425 76.0
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.2e-189 666.8 476 70.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.0e-189 666.0 422 75.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.6e-189 665.6 430 73.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 3.4e-189 665.2 430 73.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.7e-188 662.9 430 74.4
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.2e-188 662.5 425 75.8
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.8e-188 662.1 433 73.2
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 6.3e-188 661.0 435 72.6
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 6.3e-188 661.0 435 72.6
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.8e-187 659.4 435 72.9
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.8e-187 659.4 430 74.0
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.1e-187 658.3 425 75.1
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 7.0e-187 657.5 435 74.0
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.7e-186 655.6 430 72.8
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.5e-186 655.2 434 73.0
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 4.5e-186 654.8 432 72.5
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 7.7e-186 654.1 424 74.3
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 7.7e-186 654.1 430 73.5
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.0e-185 653.7 428 73.6
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-184 650.2 433 72.1
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 4.2e-184 648.3 424 72.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.8e-183 645.6 432 72.2
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.1e-183 644.4 431 72.9
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 6.1e-183 644.4 462 69.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.1e-183 644.4 433 71.4
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 8.0e-183 644.0 431 71.9
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.0e-183 644.0 433 71.1
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.0e-182 643.7 432 71.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.8e-182 642.9 435 71.5
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.0e-182 641.7 421 72.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 4.0e-182 641.7 435 71.5
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.5e-181 639.8 428 71.0
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.6e-181 639.0 433 71.8
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.6e-181 639.0 430 70.5
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 4.4e-181 638.3 433 71.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 5.7e-181 637.9 435 69.2
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 7.5e-181 637.5 427 72.1
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.3e-180 636.7 453 69.1
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.3e-180 636.7 435 71.0
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.7e-180 636.3 432 71.5
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.7e-180 635.2 434 71.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.7e-180 635.2 431 71.9
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.9e-180 634.8 433 72.3
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 4.9e-180 634.8 426 72.3
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 8.3e-180 634.0 430 71.2
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 2.4e-179 632.5 431 70.5
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.4e-179 632.5 430 71.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 3.1e-179 632.1 400 76.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.4e-179 631.3 419 73.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.5e-178 628.6 430 71.6
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.9e-178 627.9 434 71.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.0e-177 627.1 430 69.8
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.7e-177 626.3 434 70.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.9e-177 625.5 427 70.3
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.9e-177 625.2 434 69.8
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.5e-176 623.2 429 71.6
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.9e-176 622.9 430 71.4
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.9e-176 622.9 428 71.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.3e-176 622.1 422 71.1
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.6e-175 618.6 427 71.0
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.0e-174 617.1 427 70.7
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.1e-174 615.5 431 68.9
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.6e-173 612.5 500 62.4
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.4e-173 612.1 438 69.6
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 3.4e-173 612.1 430 69.8
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 5.8e-173 611.3 424 70.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 3.7e-172 608.6 476 65.3
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.9e-172 608.2 439 68.6
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 4.1e-171 605.1 402 72.9
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 9.2e-171 604.0 448 67.6
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.8e-170 600.9 431 68.4
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.3e-169 599.4 424 69.8
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 8.0e-167 590.9 406 72.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.8e-166 587.8 446 65.2
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 9.5e-160 567.4 423 65.7
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.4e-158 563.5 375 71.2
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.2e-157 560.5 431 65.7
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 2.6e-157 559.3 444 62.8
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.4e-155 552.7 409 67.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.1e-154 549.7 418 66.7
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.9e-153 545.4 430 62.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.8e-151 539.3 334 78.1
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 4.0e-150 535.4 390 66.2
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.7e-148 530.0 406 65.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.4e-147 526.9 428 62.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.7e-145 520.0 340 75.3
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 6.9e-142 508.1 284 91.2
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 2.6e-141 506.1 335 73.1
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 5.8e-141 505.0 333 73.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.8e-138 494.6 416 61.1
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 8.7e-137 491.1 344 70.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 2.1e-135 486.5 371 63.1
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.8e-135 486.1 342 70.2
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 3.6e-135 485.7 435 55.9
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.4e-134 483.0 421 56.8
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.3e-132 477.2 352 64.2
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 4.3e-128 462.2 326 68.4
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.4e-126 457.2 451 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.2e-124 449.9 415 55.9
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.5e-123 446.4 408 56.1
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.2e-123 446.0 416 53.6
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 7.4e-120 434.9 312 69.2
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.9e-112 410.2 430 52.1
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.8e-111 405.6 338 61.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.5e-109 400.6 580 39.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.3e-104 382.5 368 56.2
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.2e-103 380.2 276 65.6
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 5.3e-102 375.6 285 65.3
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 6.5e-100 368.6 366 56.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.5e-96 357.5 270 61.5
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.5e-93 345.9 247 67.2
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.5e-85 319.3 428 42.1
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.5e-83 314.3 234 65.8
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.9e-83 313.9 350 49.1
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 3.2e-83 313.2 218 67.9
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.1e-82 310.5 421 42.8
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 6.1e-82 308.9 419 43.4
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 8.3e-79 298.5 404 44.1
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 5.7e-72 275.8 218 63.8
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 9.1e-70 268.5 472 36.7
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 6.6e-68 262.3 232 56.5
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.5e-67 258.5 152 79.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.8e-66 256.9 363 42.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 4.7e-66 256.1 149 79.2
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.9e-63 246.9 157 75.2
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 3.7e-63 246.5 150 76.0
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.6e-58 231.1 409 35.7
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.0e-57 228.4 420 36.2
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.0e-56 224.2 182 64.3
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.3e-55 218.8 135 74.1
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 7.0e-54 215.7 142 72.5
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 3.0e-52 210.3 258 48.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-52 208.8 141 71.6
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 2.0e-48 197.6 118 80.5
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 4.3e-43 179.9 111 76.6
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.0e-32 144.4 92 73.9
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.0e-32 144.4 92 73.9
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 9.9e-32 142.1 129 63.6
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 6.6e-28 129.4 79 73.4
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 4.4e-24 116.7 421 26.6
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.9e-23 113.2 62 85.5
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-19 101.3 123 49.6
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-17 95.5 325 28.6
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.5e-16 91.7 71 62.0
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.3e-11 73.9 50 70.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-10 70.1 53 62.3
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 6.2e-10 69.7 58 55.2
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 8.1e-10 69.3 48 60.4
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 8.1e-10 69.3 58 55.2
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-09 68.6 47 63.8
SHI43370 Sapria himalayana HOM05D004598 ORTHO05D005550 2.2e-07 61.2 86 45.3
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 4.9e-07 60.1 63 49.2


User provided reference genes

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