Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G168366 Manihot esculenta HOM05D000003 ORTHO05D000126 1.0e-50 203.0 96 100.0
QL05p083215 Quercus lobata HOM05D000003 ORTHO05D000126 7.3e-12 73.9 81 35.8
COL.COLO4_36252 Corchorus olitorius HOM05D000003 ORTHO05D000126 6.2e-11 70.9 91 34.1
COL.COLO4_25190 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.8e-10 69.3 91 36.3
QL04p084567 Quercus lobata HOM05D000003 ORTHO05D000126 2.4e-10 68.9 78 35.9
COL.COLO4_28922 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.0e-10 68.2 93 35.5
COL.COLO4_38315 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.0e-10 68.2 81 35.8
QL05p033866 Quercus lobata HOM05D000003 ORTHO05D000126 4.0e-10 68.2 81 34.6
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 6.8e-10 67.4 81 37.0
COL.COLO4_04595 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.2e-09 66.6 95 33.7
Rhsim07G0114000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-09 66.6 85 36.5
QL02p061202 Quercus lobata HOM05D000545 ORTHO05D000539 1.5e-09 66.2 93 31.2
COL.COLO4_25128 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.0e-09 65.9 95 34.7
Prupe.8G042600 Prunus persica HOM05D000003 ORTHO05D000126 4.4e-09 64.7 86 36.0
Rhsim01G0092500 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.4e-09 64.7 95 31.6
Sc21g0002580 Simmondsia chinensis HOM05D000003 ORTHO05D000126 5.8e-09 64.3 93 33.3
COL.COLO4_08125 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.6e-09 63.9 85 37.6
Manes.13G088337 Manihot esculenta HOM05D050589 ORTHO05D000126 7.6e-09 63.9 89 32.6
QL04p044617 Quercus lobata HOM05D000003 ORTHO05D000126 9.9e-09 63.5 93 33.3
AUR62039640 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.3e-08 63.2 88 36.4
COL.COLO4_29560 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.3e-08 63.2 81 34.6
Rhsim02G0238400 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.3e-08 63.2 97 33.0
Lj1g0012060 Lotus japonicus HOM05D000003 ORTHO05D000126 1.7e-08 62.8 81 35.8
CANSAT54G2693 Cannabis sativa HOM05D000003 ORTHO05D000006 2.2e-08 62.4 82 32.9
COL.COLO4_13724 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.2e-08 62.4 81 32.1
COL.COLO4_18925 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.2e-08 62.4 81 33.3
QL05p026561 Quercus lobata HOM05D000003 ORTHO05D000126 2.2e-08 62.4 83 30.1
QL01p041898 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-08 62.0 85 35.3
Rhsim03G0083400 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.9e-08 62.0 85 35.3
AUR62032102 Chenopodium quinoa HOM05D000003 ORTHO05D000126 3.8e-08 61.6 93 28.0
Rhsim01G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.8e-08 61.6 85 35.3
QL93p0120_0010 Quercus lobata HOM05D000003 ORTHO05D000126 4.9e-08 61.2 82 36.6
Lj2g0022700 Lotus japonicus HOM05D000003 ORTHO05D000126 6.4e-08 60.8 76 36.8
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 8.4e-08 60.5 80 32.5
QL11p033897 Quercus lobata HOM05D000003 ORTHO05D000126 8.4e-08 60.5 61 41.0
Rhsim08G0187900 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.4e-08 60.5 85 34.1
EL10As4g23437 Beta vulgaris HOM05D000003 ORTHO05D000126 1.1e-07 60.1 89 32.6
CANSAT01G0653 Cannabis sativa HOM05D000003 ORTHO05D000126 1.1e-07 60.1 87 34.5
CANSAT56G1695 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-07 60.1 83 32.5
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.1e-07 60.1 84 29.8
Rhsim02G0125600 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.1e-07 60.1 84 32.1
Rhsim03G0009600 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.1e-07 60.1 85 34.1
Rhsim10G0112300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.1e-07 60.1 84 34.5
QL02p008707 Quercus lobata HOM05D000003 ORTHO05D000126 1.4e-07 59.7 84 33.3
QL09p041419 Quercus lobata HOM05D000003 ORTHO05D000126 1.4e-07 59.7 81 33.3
Atru.chr13.697 Acer truncatum HOM05D000003 ORTHO05D000126 1.9e-07 59.3 84 33.3
AUR62019956 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.9e-07 59.3 95 34.7
AUR62022378 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.9e-07 59.3 88 35.2
QL04p035086 Quercus lobata HOM05D000003 ORTHO05D000126 1.9e-07 59.3 96 33.3
QL04p035245 Quercus lobata HOM05D000003 ORTHO05D000126 1.9e-07 59.3 96 33.3
Atru.chr6.471 Acer truncatum HOM05D000003 ORTHO05D000126 2.4e-07 58.9 84 31.0
COL.COLO4_29557 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.4e-07 58.9 84 29.8
AUR62025535 Chenopodium quinoa HOM05D000003 ORTHO05D000126 3.2e-07 58.5 90 30.0
COL.COLO4_35857 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.2e-07 58.5 81 30.9
Haze_24561 Corylus avellana HOM05D000003 ORTHO05D000126 3.2e-07 58.5 76 36.8
QL03p061024 Quercus lobata HOM05D000003 ORTHO05D000126 3.2e-07 58.5 94 30.9
Rhsim01G0175100 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.2e-07 58.5 96 30.2
Rhsim02G0226500 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-07 58.5 86 30.2
Rhsim04G0150700 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.2e-07 58.5 81 30.9
Rhsim11G0048600 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.2e-07 58.5 81 32.1
TAR536G0007 Trochodendron aralioides HOM05D000003 ORTHO05D000126 3.2e-07 58.5 80 38.8
COL.COLO4_26026 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.2e-07 58.2 85 34.1
Dinv10706 Davidia involucrata HOM05D000003 ORTHO05D000126 4.2e-07 58.2 85 30.6
Gohir.A01G094300 Gossypium hirsutum HOM05D000141 ORTHO05D000780 4.2e-07 58.2 82 32.9
Gohir.D01G078800 Gossypium hirsutum HOM05D000141 ORTHO05D000780 4.2e-07 58.2 82 32.9
Gorai.002G103400 Gossypium raimondii HOM05D000141 ORTHO05D000780 4.2e-07 58.2 82 32.9
Lj3g0020321 Lotus japonicus HOM05D000003 ORTHO05D000126 4.2e-07 58.2 84 34.5
Lj4g0019340 Lotus japonicus HOM05D000003 ORTHO05D000126 4.2e-07 58.2 84 34.5
QL03p018940 Quercus lobata HOM05D000003 ORTHO05D000126 4.2e-07 58.2 93 32.3
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 4.2e-07 58.2 85 30.6
Atru.chr8.603 Acer truncatum HOM05D000003 ORTHO05D000126 5.4e-07 57.8 85 31.8
CANSAT35G1979 Cannabis sativa HOM05D000003 ORTHO05D000126 5.4e-07 57.8 80 32.5
AUR62032744 Chenopodium quinoa HOM05D000003 ORTHO05D000126 5.4e-07 57.8 97 30.9
COL.COLO4_29195 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.4e-07 57.8 77 32.5
COL.COLO4_34247 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.4e-07 57.8 86 31.4
Rhsim06G0043400 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.4e-07 57.8 80 36.2
QL04p068010 Quercus lobata HOM05D000003 ORTHO05D000126 7.1e-07 57.4 68 38.2
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.1e-07 57.4 85 34.1
Rhsim08G0119300 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.1e-07 57.4 82 32.9
Rhsim08G0131400 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.1e-07 57.4 80 33.8
TWI31G0369 Tripterygium wilfordii HOM05D000003 ORTHO05D000126 7.1e-07 57.4 75 40.0
AUR62022274 Chenopodium quinoa HOM05D000003 ORTHO05D000126 9.3e-07 57.0 98 27.6
AUR62027183 Chenopodium quinoa HOM05D000003 ORTHO05D000126 9.3e-07 57.0 98 30.6
AUR62038676 Chenopodium quinoa HOM05D000003 ORTHO05D000126 9.3e-07 57.0 59 37.3
Oeu013934.1 Olea europaea HOM05D000003 ORTHO05D000126 9.3e-07 57.0 83 30.1
Rhsim09G0090900 Rhododendron simsii HOM05D000003 ORTHO05D000126 9.3e-07 57.0 78 30.8
Atru.chr13.2021 Acer truncatum HOM05D000003 ORTHO05D000126 1.2e-06 56.6 80 32.5
EL10Ac8g19714 Beta vulgaris HOM05D000003 ORTHO05D000126 1.2e-06 56.6 68 36.8
CANSAT56G1306 Cannabis sativa HOM05D000003 ORTHO05D000126 1.2e-06 56.6 85 30.6
CANSAT80G0875 Cannabis sativa HOM05D000003 ORTHO05D000126 1.2e-06 56.6 75 34.7
AUR62038957 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.2e-06 56.6 78 35.9
Oeu011011.1 Olea europaea HOM05D000003 ORTHO05D000126 1.2e-06 56.6 83 30.1
QL02p016877 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-06 56.6 81 33.3
QL03p060940 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-06 56.6 96 30.2
QL04p005346 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-06 56.6 85 32.9
Rhsim01G0198800 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.2e-06 56.6 85 32.9
COL.COLO4_07749 Corchorus olitorius HOM05D000141 ORTHO05D000780 1.6e-06 56.2 82 31.7
COL.COLO4_13647 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.6e-06 56.2 84 32.1
Lj2g0005848 Lotus japonicus HOM05D000003 ORTHO05D000126 1.6e-06 56.2 82 31.7
QL05p073923 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-06 56.2 61 39.3
QL07p031105 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-06 56.2 68 38.2
Atru.chr4.991 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-06 55.8 82 32.9
CANSAT21G1206 Cannabis sativa HOM05D000003 ORTHO05D000126 2.1e-06 55.8 82 34.1
CANSAT56G3190 Cannabis sativa HOM05D004506 ORTHO05D005894 2.1e-06 55.8 77 37.7
AUR62025828 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.1e-06 55.8 63 34.9
AUR62036218 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.1e-06 55.8 81 34.6
AUR62044363 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.1e-06 55.8 81 34.6
COL.COLO4_33544 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.1e-06 55.8 80 33.8
FvH4_7g06172 Fragaria vesca HOM05D015790 ORTHO05D000126 2.1e-06 55.8 88 30.7
QL04p091229 Quercus lobata HOM05D000003 ORTHO05D000006 2.1e-06 55.8 81 28.4
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.1e-06 55.8 82 31.7
Rhsim11G0021600 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.1e-06 55.8 85 32.9
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 2.7e-06 55.5 85 31.8
Haze_11514 Corylus avellana HOM05D009730 ORTHO05D000126 2.7e-06 55.5 77 33.8
Haze_11520 Corylus avellana HOM05D009730 ORTHO05D000126 2.7e-06 55.5 77 33.8
Hma1.2p1_2192F.1_g316723 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.7e-06 55.5 80 33.8
Hma1.2p1_2192F.1_g316730 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.7e-06 55.5 80 33.8
Hma1.2p1_2192F.1_g316746 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.7e-06 55.5 80 33.8
Hma1.2p1_2496F.1_g323326 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.7e-06 55.5 80 33.8
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 2.7e-06 55.5 92 29.3
QL10p058267 Quercus lobata HOM05D000003 ORTHO05D000126 2.7e-06 55.5 82 29.3
QL12p015288 Quercus lobata HOM05D000003 ORTHO05D000126 2.7e-06 55.5 80 32.5
QL93p2011_0013 Quercus lobata HOM05D000003 ORTHO05D000126 2.7e-06 55.5 80 32.5
CSS0013263 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 3.5e-06 55.1 82 29.3
CANSAT64G1604 Cannabis sativa HOM05D000003 ORTHO05D000126 3.5e-06 55.1 80 32.5
AUR62005474 Chenopodium quinoa HOM05D000003 ORTHO05D000126 3.5e-06 55.1 59 35.6
Dinv16534 Davidia involucrata HOM05D000003 ORTHO05D000126 3.5e-06 55.1 94 31.9
Prupe.7G053200 Prunus persica HOM05D000003 ORTHO05D000126 3.5e-06 55.1 89 32.6
QL01p000768 Quercus lobata HOM05D000003 ORTHO05D000126 3.5e-06 55.1 82 29.3
QL05p062331 Quercus lobata HOM05D000003 ORTHO05D000126 3.5e-06 55.1 81 30.9
Rhsim02G0134700 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.5e-06 55.1 83 30.1
CSS0044769 Camellia sinensis var. sinensis HOM05D007567 ORTHO05D000126 4.6e-06 54.7 73 30.1
AUR62040430 Chenopodium quinoa HOM05D000003 ORTHO05D000126 4.6e-06 54.7 55 41.8
QL03p033500 Quercus lobata HOM05D000003 ORTHO05D000126 4.6e-06 54.7 91 27.5
QL03p048396 Quercus lobata HOM05D000003 ORTHO05D000126 4.6e-06 54.7 87 32.2
QL08p063412 Quercus lobata HOM05D000003 ORTHO05D000126 4.6e-06 54.7 81 30.9
Rhsim07G0116500 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.6e-06 54.7 81 29.6
RhsimUnG0069600 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.6e-06 54.7 72 34.7
RhsimUnG0081100 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.6e-06 54.7 85 32.9
TWI38G2234 Tripterygium wilfordii HOM05D000003 ORTHO05D000126 4.6e-06 54.7 74 32.4
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 6.0e-06 54.3 80 31.2
CANSAT78G0537 Cannabis sativa HOM05D000003 ORTHO05D000126 6.0e-06 54.3 83 31.3
AUR62014309 Chenopodium quinoa HOM05D000003 ORTHO05D000126 6.0e-06 54.3 97 29.9
AUR62030344 Chenopodium quinoa HOM05D000003 ORTHO05D000126 6.0e-06 54.3 58 36.2
COL.COLO4_22586 Corchorus olitorius HOM05D000003 ORTHO05D000126 6.0e-06 54.3 85 28.2
Haze_15723 Corylus avellana HOM05D000003 ORTHO05D000126 6.0e-06 54.3 80 32.5
Dinv03310 Davidia involucrata HOM05D000003 ORTHO05D000126 6.0e-06 54.3 84 32.1
Dinv11369 Davidia involucrata HOM05D000003 ORTHO05D000126 6.0e-06 54.3 86 32.6
Lj5g0020114 Lotus japonicus HOM05D000003 ORTHO05D000126 6.0e-06 54.3 82 29.3
Lj6g0008318 Lotus japonicus HOM05D000003 ORTHO05D000126 6.0e-06 54.3 87 31.0
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-06 54.3 82 30.5
QL10p013745 Quercus lobata HOM05D000003 ORTHO05D000126 6.0e-06 54.3 90 32.2
QL11p056942 Quercus lobata HOM05D000003 ORTHO05D000126 6.0e-06 54.3 84 32.1
Rhsim03G0167400 Rhododendron simsii HOM05D000003 ORTHO05D000126 6.0e-06 54.3 82 31.7
Atru.chr8.822 Acer truncatum HOM05D000003 ORTHO05D000167 7.8e-06 53.9 85 31.8
CSS0003648 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 7.8e-06 53.9 85 28.2
CSS0033038 Camellia sinensis var. sinensis HOM05D007567 ORTHO05D000126 7.8e-06 53.9 73 30.1
COL.COLO4_24494 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.8e-06 53.9 80 28.8
COL.COLO4_27234 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.8e-06 53.9 75 32.0
Dinv15867 Davidia involucrata HOM05D000003 ORTHO05D000126 7.8e-06 53.9 84 31.0
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 7.8e-06 53.9 77 33.8
QL11p000243 Quercus lobata HOM05D000003 ORTHO05D000126 7.8e-06 53.9 85 30.6
QL11p054030 Quercus lobata HOM05D000003 ORTHO05D000126 7.8e-06 53.9 85 29.4
QL12p001523 Quercus lobata HOM05D000003 ORTHO05D000126 7.8e-06 53.9 70 34.3
Rhsim11G0009900 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.8e-06 53.9 87 31.0
RhsimUnG0009800 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.8e-06 53.9 82 31.7


User provided reference genes

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