Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.3e-174 616.3 312 100.0
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.5e-151 539.7 317 87.4
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 6.9e-120 434.5 320 73.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 2.6e-119 432.6 310 73.5
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.2e-118 429.5 309 72.2
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 5.0e-118 428.3 311 71.7
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 9.4e-117 424.1 307 74.6
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 6.7e-115 417.9 314 70.4
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 8.8e-115 417.5 310 72.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.1e-114 417.2 315 73.7
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.1e-114 417.2 312 70.5
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 2.0e-114 416.4 296 74.3
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.0e-114 416.4 311 70.4
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.6e-114 416.0 303 74.3
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 4.4e-114 415.2 258 79.8
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 7.4e-114 414.5 302 73.2
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 9.7e-114 414.1 318 70.1
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 2.8e-113 412.5 287 76.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 3.7e-113 412.1 258 80.6
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 4.8e-113 411.8 304 71.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 4.8e-113 411.8 304 71.7
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 8.2e-113 411.0 268 77.6
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.1e-112 410.6 297 72.4
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.4e-112 410.2 310 71.9
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 3.1e-112 409.1 252 81.3
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.1e-112 409.1 291 73.5
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 3.1e-112 409.1 306 73.9
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 5.3e-112 408.3 292 74.7
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 6.9e-112 407.9 245 82.0
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 9.1e-112 407.5 304 72.0
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 2.0e-111 406.4 317 69.4
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.6e-111 406.0 273 76.6
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.6e-111 406.0 313 69.3
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 5.9e-111 404.8 249 81.5
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 6.5e-110 401.4 226 87.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.4e-109 400.2 290 73.8
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 3.2e-109 399.1 254 80.7
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.5e-109 398.3 300 71.3
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 7.2e-109 397.9 270 75.6
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 7.2e-109 397.9 250 82.0
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 7.2e-109 397.9 304 70.7
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 9.4e-109 397.5 240 84.6
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 1.2e-108 397.1 313 69.3
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 4.7e-108 395.2 297 71.7
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 7.9e-108 394.4 294 70.1
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 1.0e-107 394.0 250 79.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.4e-107 393.7 280 75.0
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 1.8e-107 393.3 305 68.5
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 2.3e-107 392.9 289 69.6
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 5.2e-107 391.7 302 70.9
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.5e-106 390.2 250 79.6
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 1.5e-106 390.2 233 83.3
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 2.0e-106 389.8 245 80.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 3.3e-106 389.0 298 68.1
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 4.4e-106 388.7 255 76.1
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 4.4e-106 388.7 298 67.4
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 1.7e-105 386.7 387 58.7
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.8e-105 386.0 283 70.7
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 3.7e-105 385.6 247 78.5
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 4.8e-105 385.2 238 79.8
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 8.2e-105 384.4 288 68.8
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 3.1e-104 382.5 288 68.1
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 3.1e-104 382.5 288 68.4
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 3.1e-104 382.5 223 85.2
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 9.1e-104 380.9 299 66.6
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 1.2e-103 380.6 293 66.6
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.6e-103 380.2 310 69.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 1.6e-103 380.2 253 76.3
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.0e-103 379.8 288 68.8
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 2.0e-103 379.8 245 75.9
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.6e-103 379.4 300 65.3
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 4.5e-103 378.6 248 75.8
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 5.9e-103 378.3 299 65.2
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 7.7e-103 377.9 245 75.5
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 1.7e-102 376.7 288 68.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.2e-102 376.3 293 67.2
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.2e-102 376.3 250 75.2
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 3.8e-102 375.6 247 75.7
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.6e-100 370.2 281 69.8
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.3e-99 366.3 211 85.3
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.5e-98 363.6 294 65.6
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 2.2e-97 359.8 226 78.3
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.4e-96 357.1 248 75.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.8e-96 356.7 215 83.3
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 7.0e-96 354.8 213 82.6
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 7.0e-96 354.8 226 77.9
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.0e-95 353.2 295 64.7
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 3.5e-95 352.4 261 72.4
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 5.9e-95 351.7 244 73.4
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 7.7e-95 351.3 282 67.4
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.7e-95 351.3 318 63.5
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.9e-94 349.4 278 67.3
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 7.2e-93 344.7 388 52.6
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 2.0e-90 336.7 226 76.5
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-88 330.9 223 73.5
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-88 330.9 228 71.9
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.4e-88 329.7 281 64.4
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 2.4e-88 329.7 301 64.8
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.6e-87 327.0 225 70.7
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 7.7e-87 324.7 193 84.5
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 1.0e-86 324.3 259 68.0
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.7e-86 323.6 299 65.2
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 3.6e-84 315.8 247 66.8
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 2.6e-82 309.7 193 80.3
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.7e-81 305.8 284 62.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 8.0e-76 288.1 258 60.5
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 9.8e-74 281.2 172 79.7
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 7.0e-72 275.0 207 72.0
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 7.8e-71 271.6 242 59.5
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.0e-70 271.2 217 67.3
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 6.4e-65 251.9 170 75.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 4.1e-56 222.6 182 59.9
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.2e-55 221.1 171 70.8
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 9.6e-45 184.9 162 62.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 4.4e-42 176.0 205 50.7
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 8.4e-41 171.8 138 68.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.1e-39 167.2 104 77.9
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.3e-38 163.7 168 54.8
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 2.3e-30 137.1 294 39.5
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.1e-29 134.8 261 41.4
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.5e-26 124.4 175 44.6
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.4e-24 117.9 180 45.6
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.3e-22 110.5 144 47.2
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.1e-21 108.2 117 57.3
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 9.6e-21 105.1 74 68.9
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.4e-19 101.3 233 31.3
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 6.5e-17 92.4 56 76.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 4.2e-16 89.7 61 67.2
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.3e-14 84.7 220 28.6
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.8e-14 84.3 88 60.2
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 3.9e-14 83.2 49 79.6
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 1.9e-08 64.3 63 61.9
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 2.7e-07 60.5 199 32.7
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 5.1e-06 56.2 32 75.0


User provided reference genes

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